More than 300 homologs were found in PanDaTox collection
for query gene Paes_0533 on replicon NC_011059
Organism: Prosthecochloris aestuarii DSM 271



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011059  Paes_0533  RNA methyltransferase, TrmH family, group 3  100 
 
 
243 aa  497  1e-140  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0590  RNA methyltransferase, TrmH family, group 3  73.55 
 
 
247 aa  380  1e-104  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0629521 
 
 
-
 
NC_008639  Cpha266_0572  RNA methyltransferase  71.67 
 
 
252 aa  361  5.0000000000000005e-99  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1616  RNA methyltransferase TrmH, group 3  70.95 
 
 
248 aa  355  2.9999999999999997e-97  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.439996 
 
 
-
 
NC_010803  Clim_0619  RNA methyltransferase, TrmH family, group 3  68.46 
 
 
248 aa  333  2e-90  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0696  RNA methyltransferase, TrmH family, group 3  71.67 
 
 
248 aa  330  2e-89  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1731  RNA methyltransferase TrmH, group 3  72.61 
 
 
248 aa  325  3e-88  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0848  RNA methyltransferase  37.34 
 
 
247 aa  177  2e-43  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000264025  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0003  RNA methyltransferase, TrmH family, group 3  39.33 
 
 
250 aa  166  4e-40  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2060  RNA methyltransferase  37.24 
 
 
277 aa  162  3e-39  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2734  RNA methyltransferase  35.12 
 
 
289 aa  163  3e-39  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2420  RNA methyltransferase  35.12 
 
 
289 aa  162  4.0000000000000004e-39  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00228978  n/a   
 
 
-
 
NC_008346  Swol_2352  putative tRNA/rRNA methyltransferase YacO  35.77 
 
 
248 aa  162  4.0000000000000004e-39  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.177652  n/a   
 
 
-
 
NC_009253  Dred_0196  RNA methyltransferase  36.63 
 
 
243 aa  157  1e-37  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00000588208  n/a   
 
 
-
 
NC_007760  Adeh_1583  RNA methyltransferase TrmH, group 3  38.43 
 
 
256 aa  156  3e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.780301  n/a   
 
 
-
 
NC_008009  Acid345_1003  RNA methyltransferase TrmH, group 3  35.42 
 
 
261 aa  155  4e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.60779  normal  0.0289199 
 
 
-
 
NC_009675  Anae109_2230  RNA methyltransferase  38.59 
 
 
245 aa  155  5.0000000000000005e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0204347 
 
 
-
 
NC_013205  Aaci_2730  RNA methyltransferase, TrmH family, group 3  36.67 
 
 
255 aa  155  5.0000000000000005e-37  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.751116  n/a   
 
 
-
 
NC_009439  Pmen_0644  RNA methyltransferase  36.25 
 
 
250 aa  154  9e-37  Pseudomonas mendocina ymp  Bacteria  normal  hitchhiker  0.000634261 
 
 
-
 
NC_009379  Pnuc_1270  RNA methyltransferase  35.74 
 
 
251 aa  154  1e-36  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.907902  n/a   
 
 
-
 
NC_012793  GWCH70_0092  RNA methyltransferase, TrmH family, group 3  34.02 
 
 
245 aa  154  1e-36  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000000607271  n/a   
 
 
-
 
NC_011891  A2cp1_2368  RNA methyltransferase, TrmH family, group 3  37.19 
 
 
256 aa  152  5e-36  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.900248  n/a   
 
 
-
 
NC_012560  Avin_07630  RNA methyltransferase TrmH, group 3  36.67 
 
 
247 aa  152  5e-36  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2929  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
263 aa  152  5.9999999999999996e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_2280  RNA methyltransferase, TrmH family, group 3  37.6 
 
 
256 aa  151  8e-36  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2889  RNA methyltransferase, TrmH family, group 3  34.44 
 
 
248 aa  151  8e-36  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0406  RNA methyltransferase  35.56 
 
 
244 aa  150  1e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0940631  n/a   
 
 
-
 
NC_012918  GM21_1336  RNA methyltransferase, TrmH family, group 3  34.44 
 
 
249 aa  150  2e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000822091 
 
 
-
 
NC_013411  GYMC61_0088  RNA methyltransferase, TrmH family, group 3  34.16 
 
 
246 aa  149  3e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_2172  RNA methyltransferase TrmH, group 3  34.85 
 
 
237 aa  149  4e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0146478  n/a   
 
 
-
 
NC_013216  Dtox_0267  RNA methyltransferase, TrmH family, group 3  34.85 
 
 
246 aa  149  4e-35  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000223613  normal  0.011395 
 
 
-
 
NC_011899  Hore_00990  RNA methyltransferase  34.31 
 
 
244 aa  147  1.0000000000000001e-34  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000314375  n/a   
 
 
-
 
NC_010718  Nther_0174  RNA methyltransferase, TrmH family, group 3  33.74 
 
 
247 aa  147  2.0000000000000003e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000034032  normal 
 
 
-
 
NC_008025  Dgeo_2022  RNA methyltransferase TrmH, group 3  37.08 
 
 
246 aa  146  2.0000000000000003e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1474  RNA methyltransferase, TrmH family, group 3  36.84 
 
 
239 aa  146  2.0000000000000003e-34  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0162513  n/a   
 
 
-
 
NC_013037  Dfer_2661  RNA methyltransferase, TrmH family, group 3  35.54 
 
 
256 aa  146  2.0000000000000003e-34  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_3320  RNA methyltransferase, TrmH family, group 3  34.18 
 
 
315 aa  146  3e-34  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000000334493  n/a   
 
 
-
 
NC_012034  Athe_2043  RNA methyltransferase, TrmH family, group 3  32.08 
 
 
253 aa  145  5e-34  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000129806  n/a   
 
 
-
 
NC_008463  PA14_65190  TrmH family RNA methyltransferase , group 3  35.42 
 
 
248 aa  145  8.000000000000001e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0401  RNA methyltransferase, TrmH family, group 3  35.1 
 
 
246 aa  144  1e-33  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000436094  n/a   
 
 
-
 
NC_009656  PSPA7_5663  putative rRNA methylase  35.42 
 
 
248 aa  144  1e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1822  rRNA methylase  33.05 
 
 
249 aa  144  1e-33  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0209  RNA methyltransferase  31.82 
 
 
251 aa  144  2e-33  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0190  RNA methyltransferase  36.67 
 
 
251 aa  143  2e-33  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.153268  n/a   
 
 
-
 
NC_007492  Pfl01_0533  RNA methyltransferase TrmH, group 3  35.68 
 
 
255 aa  143  2e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0666066 
 
 
-
 
NC_010682  Rpic_1073  RNA methyltransferase, TrmH family, group 3  33.61 
 
 
250 aa  143  3e-33  Ralstonia pickettii 12J  Bacteria  normal  0.5513  normal 
 
 
-
 
NC_007404  Tbd_0609  RNA methyltransferase TrmH  33.75 
 
 
254 aa  143  3e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.0802048 
 
 
-
 
NC_011138  MADE_03462  23S rRNA (guanosine-2'-O-)-methyltransferase  33.75 
 
 
246 aa  143  3e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_05650  putative tRNA:rRNA methyltransferase  35.12 
 
 
245 aa  142  5e-33  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0580  RNA methyltransferase TrmH, group 3  34.85 
 
 
251 aa  142  6e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.912866  normal 
 
 
-
 
NC_011725  BCB4264_A0112  RNA methyltransferase, TrmH family, group 3  30.96 
 
 
247 aa  141  7e-33  Bacillus cereus B4264  Bacteria  hitchhiker  0.0011476  n/a   
 
 
-
 
NC_011729  PCC7424_4146  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
310 aa  141  8e-33  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_002947  PP_4879  RNA methyltransferase  35.42 
 
 
248 aa  140  9.999999999999999e-33  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1165  RNA methyltransferase, TrmH family, group 3  33.61 
 
 
250 aa  141  9.999999999999999e-33  Ralstonia pickettii 12D  Bacteria  normal  0.0693312  normal 
 
 
-
 
NC_009512  Pput_4759  RNA methyltransferase  35.42 
 
 
248 aa  140  9.999999999999999e-33  Pseudomonas putida F1  Bacteria  normal  normal  0.0810768 
 
 
-
 
NC_008532  STER_0122  tRNA/rRNA methyltransferase  32.37 
 
 
247 aa  141  9.999999999999999e-33  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4934  RNA methyltransferase, TrmH family, group 3  34.44 
 
 
250 aa  140  1.9999999999999998e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3322  RNA methyltransferase  34.6 
 
 
248 aa  140  1.9999999999999998e-32  Clostridium phytofermentans ISDg  Bacteria  normal  0.752431  n/a   
 
 
-
 
NC_009654  Mmwyl1_1408  RNA methyltransferase  34.84 
 
 
255 aa  140  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.0243869  normal  0.695011 
 
 
-
 
NC_011658  BCAH187_A0122  RNA methyltransferase, TrmH family, group 3  30.54 
 
 
247 aa  139  3e-32  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000258465  n/a   
 
 
-
 
NC_003909  BCE_0091  RNA methyltransferase  30.54 
 
 
247 aa  139  3e-32  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00797863  n/a   
 
 
-
 
NC_005945  BAS0091  RNA methyltransferase  30.54 
 
 
247 aa  139  3e-32  Bacillus anthracis str. Sterne  Bacteria  normal  0.678867  n/a   
 
 
-
 
NC_005957  BT9727_0088  tRNA/rRNA methyltransferase SpoU  30.54 
 
 
247 aa  139  3e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000158072  n/a   
 
 
-
 
NC_006274  BCZK0087  TrmH family tRNA methyltransferase  30.54 
 
 
247 aa  139  3e-32  Bacillus cereus E33L  Bacteria  normal  0.528227  n/a   
 
 
-
 
NC_007530  GBAA_0091  RNA methyltransferase  30.54 
 
 
247 aa  139  3e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000227809  n/a   
 
 
-
 
NC_010322  PputGB1_4935  RNA methyltransferase  35.42 
 
 
248 aa  139  3e-32  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000134443 
 
 
-
 
NC_011773  BCAH820_0102  RNA methyltransferase, TrmH family, group 3  30.54 
 
 
247 aa  139  3e-32  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.238e-61 
 
 
-
 
NC_003295  RSc1229  putative tRNA/rRNA methyltransferase protein  34.43 
 
 
249 aa  139  3.9999999999999997e-32  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00902362  normal 
 
 
-
 
NC_008255  CHU_0306  TrmH family tRNA methyltransferase  37.19 
 
 
268 aa  139  3.9999999999999997e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0116  RNA methyltransferase TrmH family, group 3  35.59 
 
 
238 aa  139  4.999999999999999e-32  Meiothermus ruber DSM 1279  Bacteria  normal  0.328344  normal  0.298059 
 
 
-
 
NC_010501  PputW619_4669  RNA methyltransferase  35 
 
 
248 aa  139  4.999999999999999e-32  Pseudomonas putida W619  Bacteria  normal  normal  0.0289755 
 
 
-
 
NC_011772  BCG9842_B5214  RNA methyltransferase, TrmH family, group 3  30.13 
 
 
247 aa  139  4.999999999999999e-32  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000196945  unclonable  9.19298e-26 
 
 
-
 
NC_008528  OEOE_1425  rRNA methylase  29.28 
 
 
233 aa  139  4.999999999999999e-32  Oenococcus oeni PSU-1  Bacteria  hitchhiker  0.0000022514  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0086  RNA methyltransferase  31.38 
 
 
247 aa  139  6e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0239075  n/a   
 
 
-
 
NC_010002  Daci_4032  RNA methyltransferase  31.69 
 
 
263 aa  138  6e-32  Delftia acidovorans SPH-1  Bacteria  normal  0.104893  normal  0.17996 
 
 
-
 
NC_009632  SaurJH1_0568  RNA methyltransferase  31.82 
 
 
248 aa  138  7.999999999999999e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.927994  n/a   
 
 
-
 
NC_009487  SaurJH9_0554  RNA methyltransferase  31.82 
 
 
248 aa  138  7.999999999999999e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.850775  n/a   
 
 
-
 
NC_010531  Pnec_0683  RNA methyltransferase, TrmH family, group 3  33.33 
 
 
255 aa  138  8.999999999999999e-32  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.427045 
 
 
-
 
NC_011206  Lferr_1105  RNA methyltransferase, TrmH family, group 3  36.29 
 
 
255 aa  138  1e-31  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.919918  normal 
 
 
-
 
NC_011761  AFE_0991  tRNA (guanosine-2'-O-)-methyltransferase, putative  36.29 
 
 
255 aa  138  1e-31  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1084  RNA methyltransferase  37.24 
 
 
242 aa  137  1e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1036  RNA methyltransferase  37.24 
 
 
242 aa  137  1e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0086  RNA methyltransferase  30.54 
 
 
247 aa  137  1e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00000284808  n/a   
 
 
-
 
NC_011126  HY04AAS1_0313  RNA methyltransferase, TrmH family, group 3  32.35 
 
 
251 aa  137  2e-31  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000179001  n/a   
 
 
-
 
NC_013501  Rmar_1580  RNA methyltransferase, TrmH family, group 3  36.78 
 
 
252 aa  136  2e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4616  23S rRNA (guanosine-2'-O-)-methyltransferase  31.69 
 
 
251 aa  136  3.0000000000000003e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2065  rRNA methylase  32.78 
 
 
242 aa  136  3.0000000000000003e-31  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0340  rRNA methylase  29.58 
 
 
251 aa  136  4e-31  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000065422  hitchhiker  0.000000457527 
 
 
-
 
NC_010513  Xfasm12_0988  tRNA/rRNA methyltransferase  32.92 
 
 
249 aa  135  5e-31  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2061  RNA methyltransferase, TrmH family, group 3  35.54 
 
 
254 aa  135  5e-31  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0954424 
 
 
-
 
NC_010830  Aasi_1164  hypothetical protein  32.37 
 
 
246 aa  135  6.0000000000000005e-31  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.2944 
 
 
-
 
NC_006369  lpl0092  hypothetical protein  36.36 
 
 
249 aa  135  7.000000000000001e-31  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_002976  SERP0172  RNA methyltransferase  31.25 
 
 
249 aa  134  9.999999999999999e-31  Staphylococcus epidermidis RP62A  Bacteria  normal  0.0806813  n/a   
 
 
-
 
NC_006368  lpp0107  hypothetical protein  36.36 
 
 
249 aa  134  9.999999999999999e-31  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010577  XfasM23_0869  RNA methyltransferase  32.92 
 
 
249 aa  134  9.999999999999999e-31  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3354  23S rRNA (guanosine-2'-O-)-methyltransferase  31.97 
 
 
246 aa  134  9.999999999999999e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0824924  n/a   
 
 
-
 
NC_007963  Csal_0887  RNA methyltransferase TrmH, group 3  33.61 
 
 
261 aa  134  1.9999999999999998e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.986853  n/a   
 
 
-
 
NC_007973  Rmet_2091  RNA methyltransferase TrmH, group 3  31.95 
 
 
247 aa  134  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.254713  normal  0.346719 
 
 
-
 
NC_007912  Sde_1055  tyrosyl-tRNA synthetase, class Ib  29.88 
 
 
248 aa  132  3e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.932424 
 
 
-
 
NC_007947  Mfla_1625  RNA methyltransferase TrmH, group 3  32.38 
 
 
251 aa  133  3e-30  Methylobacillus flagellatus KT  Bacteria  normal  0.117052  hitchhiker  0.00235214 
 
 
-
 
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