| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4934 |
|---|
| Symbol | |
|---|
| ID | 1186617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5589356 |
|---|
| End bp | 5590108 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396253 |
|---|
| Product | RNA methyltransferase, TrmH family, group 3 |
|---|
| Protein accession | NP_794667 |
|---|
| Protein GI | 28872048 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC TGGAAAAAAT CTACGGCGTG CACGCCGTAG AAGCTTTGCT TCGTCATCAC
CCCAAGCGCG TCAAGCACAT CTGGCTGGCA GAGGGTCGTA ATGACCCTCG TGTTCAAACG
CTGGTCGCAC TGGCGAGCGA AAATCGCGTG ACTATCGGTC AGGCCGAGCG TCGCGAAATG
GACGCCTGGG TTGAAGGCGT GCATCAGGGC GTGGTCGCCG ACGTCAGCCC GAGCCAGGTC
TGGGGCGAGG CAATGCTCGA TGAGCTGCTT GATCGCAGCG AGGGCCCGCC GTTGCTGCTG
GTGCTTGATG GCGTGACTGA TCCGCATAAC CTGGGCGCTT GCCTGCGTAC CGCCGATGCG
GCCGGTGCGC TGGCTGTTAT CGTGCCCAAG GACAAGTCTG CAACCTTGAC GCCTGCTGTG
CGAAAAGTCG CCTGCGGCGC TGCGGAAGTG ATTCCTCTGG TGGCCGTGAC CAACCTGGCC
CGCACGCTGG AAAAACTTCA GCAGCGCGGC TTGTGGGTTG TCGGTACAGC AGGCGAGGCC
GAGGTCGAGT TGTATCAGCA GGACCTGACC GGCCCGACGA TCATCATTAT GGGGGCTGAA
GGCAAAGGCA TGCGTCGCCT GACCCGCGAG CACTGCGACT ACCTTGTGCG CCTGCCGATG
GCGGGCAGCG TCAGCAGCCT CAACGTGTCG GTCGCGACCG GTGTGTGCCT GTTTGAAGCG
CTGCGTCAGC GCTCCGCGAA GCGGAAGCCC TAA
|
|---|
| Protein sequence | MSQLEKIYGV HAVEALLRHH PKRVKHIWLA EGRNDPRVQT LVALASENRV TIGQAERREM
DAWVEGVHQG VVADVSPSQV WGEAMLDELL DRSEGPPLLL VLDGVTDPHN LGACLRTADA
AGALAVIVPK DKSATLTPAV RKVACGAAEV IPLVAVTNLA RTLEKLQQRG LWVVGTAGEA
EVELYQQDLT GPTIIIMGAE GKGMRRLTRE HCDYLVRLPM AGSVSSLNVS VATGVCLFEA
LRQRSAKRKP
|
|---|
| |