Gene Sfri_3354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3354 
Symbol 
ID4280256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4002482 
End bp4003222 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content44% 
IMG OID638136175 
Product23S rRNA (guanosine-2'-O-)-methyltransferase 
Protein accessionYP_752029 
Protein GI114564515 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID[TIGR00186] rRNA methylase, putative, group 3 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0824924 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC AAGATACCAT TTTTGGCATT CACGCCGTTC AAGCTTTGTT AGATAACAGC 
CCTGAACGTG TCATTGAACT TTGGCTATTA CAAGGCCGTG ATGACGAACG CTTAACCCCG
TTAATTAATC TAGCGTCAAC CTTTGGTACA ACACTACAAC GTGCAGCACG TAAAGTGTTA
GATGATAAAG CGGGTAGCTC ACAACACCAA GGTATTGTGG CTCGCGTTAA GGCTGTTAAG
CCGTTGACTG AAAAAGATTT AGATGAGTTA CTTGATAAAA CAGCAGTGCC TTTTTTATTG
ATTTTAGACG GTGTAACTGA CCCACATAAT CTTGGTGCAT GTTTGCGTAA TGCTGATGCG
GCTGGGGTGC ATGCGGTTAT CGTACCAAAA GATAACTCAG TAGGGTTAAC TTCAACCGTA
AGCAAAGTTG CTTGTGGCGC AGCAGAAACC ATACCGTTAT TCCAAGTGAC TAACCTTGCT
CGTACCATGC GTCACTTGCA AGATAAAGGT GTTTGGATTG TAGGTACTGC AGGCGAAGCC
GAAGGTAATG TATACCAAGC AGACCTTAAA GGGCCGCTAG CCATTGCTAT GGGCGCAGAA
GATAAAGGTT TGCGTCGTTT ATCGCGCGAA GGTTGTGATT CACTCGTATC AATTCCAATG
TCTGGAAGTG TGTCTAGTCT CAACGTGTCT GTTGCCACTG GTGTTTGCTT ATTTGAAGCG
GTTAGACAGC GTTTAGGTTA A
 
Protein sequence
MKKQDTIFGI HAVQALLDNS PERVIELWLL QGRDDERLTP LINLASTFGT TLQRAARKVL 
DDKAGSSQHQ GIVARVKAVK PLTEKDLDEL LDKTAVPFLL ILDGVTDPHN LGACLRNADA
AGVHAVIVPK DNSVGLTSTV SKVACGAAET IPLFQVTNLA RTMRHLQDKG VWIVGTAGEA
EGNVYQADLK GPLAIAMGAE DKGLRRLSRE GCDSLVSIPM SGSVSSLNVS VATGVCLFEA
VRQRLG