More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2929 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2929  RNA methyltransferase, TrmH family, group 3  100 
 
 
263 aa  536  1e-151  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2661  RNA methyltransferase, TrmH family, group 3  42.53 
 
 
256 aa  226  2e-58  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2061  RNA methyltransferase, TrmH family, group 3  44.98 
 
 
254 aa  222  4e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0954424 
 
 
-
 
NC_013730  Slin_3136  RNA methyltransferase, TrmH family, group 3  44.75 
 
 
276 aa  222  6e-57  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0728  RNA methyltransferase, TrmH family, group 3  43.1 
 
 
244 aa  218  7e-56  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1848  RNA methyltransferase  44.63 
 
 
249 aa  206  2e-52  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_0406  RNA methyltransferase  41.35 
 
 
244 aa  203  3e-51  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0940631  n/a   
 
 
-
 
NC_008255  CHU_0306  TrmH family tRNA methyltransferase  41.84 
 
 
268 aa  199  5e-50  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_010830  Aasi_1164  hypothetical protein  42.19 
 
 
246 aa  196  4.0000000000000005e-49  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.2944 
 
 
-
 
NC_014230  CA2559_05650  putative tRNA:rRNA methyltransferase  37.82 
 
 
245 aa  174  9.999999999999999e-43  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0088  RNA methyltransferase, TrmH family, group 3  34.6 
 
 
246 aa  172  5e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0405  RNA methyltransferase, TrmH family, group 3  36.1 
 
 
254 aa  169  4e-41  Ammonifex degensii KC4  Bacteria  hitchhiker  0.0083776  n/a   
 
 
-
 
NC_012793  GWCH70_0092  RNA methyltransferase, TrmH family, group 3  34.73 
 
 
245 aa  169  6e-41  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000000607271  n/a   
 
 
-
 
NC_009674  Bcer98_0086  RNA methyltransferase  35.27 
 
 
247 aa  166  2e-40  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00000284808  n/a   
 
 
-
 
NC_009253  Dred_0196  RNA methyltransferase  35.27 
 
 
243 aa  165  5.9999999999999996e-40  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00000588208  n/a   
 
 
-
 
NC_011898  Ccel_3320  RNA methyltransferase, TrmH family, group 3  36.33 
 
 
315 aa  165  8e-40  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000000334493  n/a   
 
 
-
 
NC_003909  BCE_0091  RNA methyltransferase  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00797863  n/a   
 
 
-
 
NC_005945  BAS0091  RNA methyltransferase  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus anthracis str. Sterne  Bacteria  normal  0.678867  n/a   
 
 
-
 
NC_005957  BT9727_0088  tRNA/rRNA methyltransferase SpoU  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000158072  n/a   
 
 
-
 
NC_011773  BCAH820_0102  RNA methyltransferase, TrmH family, group 3  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.238e-61 
 
 
-
 
NC_006274  BCZK0087  TrmH family tRNA methyltransferase  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus cereus E33L  Bacteria  normal  0.528227  n/a   
 
 
-
 
NC_007530  GBAA_0091  RNA methyltransferase  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000227809  n/a   
 
 
-
 
NC_011658  BCAH187_A0122  RNA methyltransferase, TrmH family, group 3  34.44 
 
 
247 aa  162  4.0000000000000004e-39  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000258465  n/a   
 
 
-
 
NC_011772  BCG9842_B5214  RNA methyltransferase, TrmH family, group 3  34.02 
 
 
247 aa  162  6e-39  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000196945  unclonable  9.19298e-26 
 
 
-
 
NC_010320  Teth514_0848  RNA methyltransferase  35 
 
 
247 aa  161  8.000000000000001e-39  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000264025  n/a   
 
 
-
 
NC_011725  BCB4264_A0112  RNA methyltransferase, TrmH family, group 3  34.58 
 
 
247 aa  161  1e-38  Bacillus cereus B4264  Bacteria  hitchhiker  0.0011476  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0086  RNA methyltransferase  34.02 
 
 
247 aa  160  2e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0239075  n/a   
 
 
-
 
NC_009012  Cthe_2060  RNA methyltransferase  33.08 
 
 
277 aa  159  4e-38  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2043  RNA methyltransferase, TrmH family, group 3  35.59 
 
 
253 aa  159  4e-38  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000129806  n/a   
 
 
-
 
NC_013205  Aaci_2730  RNA methyltransferase, TrmH family, group 3  35.04 
 
 
255 aa  155  9e-37  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.751116  n/a   
 
 
-
 
NC_013216  Dtox_0267  RNA methyltransferase, TrmH family, group 3  34.16 
 
 
246 aa  153  2.9999999999999998e-36  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000223613  normal  0.011395 
 
 
-
 
NC_010718  Nther_0174  RNA methyltransferase, TrmH family, group 3  32.38 
 
 
247 aa  151  8.999999999999999e-36  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000034032  normal 
 
 
-
 
NC_009943  Dole_1909  RNA methyltransferase  34.14 
 
 
256 aa  150  2e-35  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000520024  n/a   
 
 
-
 
NC_009513  Lreu_0305  RNA methyltransferase  33.06 
 
 
249 aa  150  3e-35  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000000127836  n/a   
 
 
-
 
NC_012918  GM21_1336  RNA methyltransferase, TrmH family, group 3  34.31 
 
 
249 aa  149  5e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000822091 
 
 
-
 
NC_008531  LEUM_1822  rRNA methylase  33.2 
 
 
249 aa  148  7e-35  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00990  RNA methyltransferase  31.36 
 
 
244 aa  148  8e-35  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000314375  n/a   
 
 
-
 
NC_011145  AnaeK_2280  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
256 aa  147  1.0000000000000001e-34  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1616  RNA methyltransferase TrmH, group 3  33.61 
 
 
248 aa  147  2.0000000000000003e-34  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.439996 
 
 
-
 
NC_007644  Moth_2481  RNA methyltransferase TrmH, group 3  32.63 
 
 
246 aa  147  2.0000000000000003e-34  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000000314444  hitchhiker  0.00338936 
 
 
-
 
NC_011891  A2cp1_2368  RNA methyltransferase, TrmH family, group 3  33.06 
 
 
256 aa  147  2.0000000000000003e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.900248  n/a   
 
 
-
 
NC_010001  Cphy_3322  RNA methyltransferase  34.45 
 
 
248 aa  147  2.0000000000000003e-34  Clostridium phytofermentans ISDg  Bacteria  normal  0.752431  n/a   
 
 
-
 
NC_009675  Anae109_2230  RNA methyltransferase  32.64 
 
 
245 aa  146  4.0000000000000006e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0204347 
 
 
-
 
NC_010803  Clim_0619  RNA methyltransferase, TrmH family, group 3  34.43 
 
 
248 aa  144  1e-33  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1583  RNA methyltransferase TrmH, group 3  33.06 
 
 
256 aa  144  1e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.780301  n/a   
 
 
-
 
NC_011146  Gbem_2889  RNA methyltransferase, TrmH family, group 3  34.58 
 
 
248 aa  144  2e-33  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0590  RNA methyltransferase, TrmH family, group 3  34.02 
 
 
247 aa  144  2e-33  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0629521 
 
 
-
 
NC_008261  CPF_2734  RNA methyltransferase  32.92 
 
 
289 aa  144  2e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2420  RNA methyltransferase  32.92 
 
 
289 aa  144  2e-33  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00228978  n/a   
 
 
-
 
NC_008346  Swol_2352  putative tRNA/rRNA methyltransferase YacO  32.37 
 
 
248 aa  143  3e-33  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.177652  n/a   
 
 
-
 
NC_008639  Cpha266_0572  RNA methyltransferase  34.3 
 
 
252 aa  142  5e-33  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1356  RNA methyltransferase TrmH, group 3  34.31 
 
 
250 aa  142  6e-33  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000394989  hitchhiker  8.416419999999999e-20 
 
 
-
 
NC_008740  Maqu_2387  RNA methyltransferase  33.48 
 
 
245 aa  141  9.999999999999999e-33  Marinobacter aquaeolei VT8  Bacteria  normal  0.939992  n/a   
 
 
-
 
NC_011059  Paes_0533  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
243 aa  141  9.999999999999999e-33  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_0568  RNA methyltransferase  32.92 
 
 
248 aa  140  1.9999999999999998e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.927994  n/a   
 
 
-
 
NC_009487  SaurJH9_0554  RNA methyltransferase  32.92 
 
 
248 aa  140  1.9999999999999998e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.850775  n/a   
 
 
-
 
NC_008148  Rxyl_2172  RNA methyltransferase TrmH, group 3  34.57 
 
 
237 aa  140  1.9999999999999998e-32  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0146478  n/a   
 
 
-
 
NC_008530  LGAS_0340  rRNA methylase  32.1 
 
 
251 aa  140  1.9999999999999998e-32  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000065422  hitchhiker  0.000000457527 
 
 
-
 
NC_002976  SERP0172  RNA methyltransferase  32.35 
 
 
249 aa  140  3e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  0.0806813  n/a   
 
 
-
 
NC_011726  PCC8801_0265  RNA methyltransferase, TrmH family, group 3  32.8 
 
 
292 aa  140  3e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0264  RNA methyltransferase, TrmH family, group 3  32.8 
 
 
292 aa  140  3e-32  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1677  RNA methyltransferase  33.33 
 
 
251 aa  139  6e-32  Pelobacter propionicus DSM 2379  Bacteria  normal  0.756814  n/a   
 
 
-
 
NC_014165  Tbis_0507  RNA methyltransferase, TrmH family, group 3  33.88 
 
 
322 aa  139  7e-32  Thermobispora bispora DSM 43833  Bacteria  normal  0.533536  normal 
 
 
-
 
NC_011830  Dhaf_0401  RNA methyltransferase, TrmH family, group 3  32.37 
 
 
246 aa  138  1e-31  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000436094  n/a   
 
 
-
 
NC_013501  Rmar_1580  RNA methyltransferase, TrmH family, group 3  33.61 
 
 
252 aa  137  2e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0696  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
248 aa  137  2e-31  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0116  RNA methyltransferase TrmH family, group 3  32.34 
 
 
238 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  0.328344  normal  0.298059 
 
 
-
 
NC_010506  Swoo_4216  23S rRNA (guanosine-2'-O-)-methyltransferase  34.25 
 
 
245 aa  137  2e-31  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.000341805 
 
 
-
 
NC_007333  Tfu_0213  RNA methyltransferase TrmH, group 3  36 
 
 
324 aa  136  3.0000000000000003e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4146  RNA methyltransferase, TrmH family, group 3  31.34 
 
 
310 aa  136  3.0000000000000003e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010424  Daud_0190  RNA methyltransferase  31.82 
 
 
251 aa  136  3.0000000000000003e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.153268  n/a   
 
 
-
 
NC_008009  Acid345_1003  RNA methyltransferase TrmH, group 3  32.79 
 
 
261 aa  136  4e-31  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.60779  normal  0.0289199 
 
 
-
 
NC_009664  Krad_0912  RNA methyltransferase, TrmH family, group 3  33.98 
 
 
321 aa  135  7.000000000000001e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_007973  Rmet_2091  RNA methyltransferase TrmH, group 3  38.73 
 
 
247 aa  135  7.000000000000001e-31  Cupriavidus metallidurans CH34  Bacteria  normal  0.254713  normal  0.346719 
 
 
-
 
NC_013510  Tcur_0712  RNA methyltransferase, TrmH family, group 3  34.5 
 
 
306 aa  135  8e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1462  RNA methyltransferase  32.22 
 
 
245 aa  134  9.999999999999999e-31  Geobacter sulfurreducens PCA  Bacteria  normal  0.0405731  n/a   
 
 
-
 
NC_003910  CPS_4616  23S rRNA (guanosine-2'-O-)-methyltransferase  35.14 
 
 
251 aa  134  9.999999999999999e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1867  RNA methyltransferase, TrmH family, group 3  33.06 
 
 
246 aa  134  9.999999999999999e-31  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2022  RNA methyltransferase TrmH, group 3  31.38 
 
 
246 aa  135  9.999999999999999e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0416  RNA methyltransferase  34.31 
 
 
246 aa  134  1.9999999999999998e-30  Magnetococcus sp. MC-1  Bacteria  normal  0.896719  normal  0.93402 
 
 
-
 
NC_012856  Rpic12D_1165  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
250 aa  134  1.9999999999999998e-30  Ralstonia pickettii 12D  Bacteria  normal  0.0693312  normal 
 
 
-
 
NC_010682  Rpic_1073  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
250 aa  133  3e-30  Ralstonia pickettii 12J  Bacteria  normal  0.5513  normal 
 
 
-
 
NC_013235  Namu_4924  RNA methyltransferase, TrmH family, group 3  32.26 
 
 
326 aa  133  3e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1304  RNA methyltransferase TrmH, group 3  34.68 
 
 
652 aa  133  3.9999999999999996e-30  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3084  RNA methyltransferase, TrmH family, group 3  34.03 
 
 
234 aa  132  3.9999999999999996e-30  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0644  RNA methyltransferase  32.74 
 
 
250 aa  132  5e-30  Pseudomonas mendocina ymp  Bacteria  normal  hitchhiker  0.000634261 
 
 
-
 
NC_008820  P9303_15801  rRNA methylase  36.03 
 
 
536 aa  132  5e-30  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007335  PMN2A_0262  RNA methyltransferase TrmH, group 3  34.23 
 
 
416 aa  132  6e-30  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4313  RNA methyltransferase, TrmH family, group 3  33.46 
 
 
320 aa  132  6.999999999999999e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0738  23S rRNA (guanosine-2'-O-)-methyltransferase  36.2 
 
 
246 aa  132  7.999999999999999e-30  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000750261  hitchhiker  0.000830683 
 
 
-
 
NC_007413  Ava_4413  RNA methyltransferase TrmH, group 3  30.57 
 
 
327 aa  132  7.999999999999999e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_2065  rRNA methylase  32.37 
 
 
242 aa  132  7.999999999999999e-30  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2067  RNA methyltransferase, TrmH family, group 3  30.53 
 
 
326 aa  132  7.999999999999999e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0083  RNA methyltransferase  32.51 
 
 
250 aa  132  7.999999999999999e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0708  23S rRNA (guanosine-2'-O-)-methyltransferase  36.2 
 
 
246 aa  132  7.999999999999999e-30  Shewanella baltica OS185  Bacteria  normal  0.106779  n/a   
 
 
-
 
NC_007516  Syncc9605_1155  RNA methyltransferase TrmH, group 3  33.61 
 
 
542 aa  131  9e-30  Synechococcus sp. CC9605  Bacteria  normal  0.623752  normal 
 
 
-
 
NC_009379  Pnuc_1270  RNA methyltransferase  35.92 
 
 
251 aa  131  9e-30  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.907902  n/a   
 
 
-
 
NC_008819  NATL1_09311  RNA methyltransferase TrmH, group 3  34.23 
 
 
442 aa  131  1.0000000000000001e-29  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.0566162 
 
 
-
 
NC_007347  Reut_A2071  RNA methyltransferase TrmH, group 3  37.25 
 
 
256 aa  131  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0750  23S rRNA (guanosine-2'-O-)-methyltransferase  35.75 
 
 
246 aa  131  1.0000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.050001  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>