Gene Pnec_0683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0683 
Symbol 
ID6182925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp593853 
End bp594620 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content45% 
IMG OID641671338 
ProductRNA methyltransferase, TrmH family, group 3 
Protein accessionYP_001797533 
Protein GI171463420 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID[TIGR00186] rRNA methylase, putative, group 3 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.427045 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAAA TGCTAGTTGG ATTTCATGTG GTGCAAGCGC GTTTACGTGT AGATCCCAAT 
AGCTTAAAGT CGGTGTACTT TGATTCTGGT CGGCGCGATA GACGCATGGG CGATTTCTTA
AAGCAAGCCG AAGAGATTTT GGGAGAGCGT TTACATGCGG CTGATGCAGA ACGTTTGCAT
AAGTTAACAG GACATGATCG GCACCAAGGC GTTGTTGCGT TAGCTGAAAA AATGGCTATC
GTTCGAACTA TTACCGAGGT TGTTGAGGAT GTTGAGAGCA CACACGAGAA GCCCTTATTC
TTGATATTAG ATGGCGTAAC AGATCCACAT AATTTTGGTG CCTGTCTGCG TGTAGCTGAC
GGTGCTGGTG TAGATGCTGC TGTGATTCCT AAAGATCGTT CTGCATCAAT TAATGCTACT
GTGAGTAAGG TTTCCGGTGG CGCAGCTGAA GTCATGCCAG TAATTACTGT TACTAACCTT
GTTCGTAGTA TGAAAGAAAT GCAAGAAGCA GGTGTTTGGC TGATCGGTAC TGATGATGAG
GCGACTAAAT CGATTTATGA CATCGACCTT ACTGGTTCTA TTGCAATAGT CATGGGTGCT
GAAGGTGAGG GTATGCGTCG TTTGACAAAA GAAACCTGTG ATGAGCTTGT ACGCATCCCA
ATGCAGGGCG TTGTTTCAAG CTTGAATGTG TCAGTTGCTA GTGGCGTATG CTTATATGAG
GTATTAAGAC AGCGTCTATC CAAGGTAACT GACAAGGCTG CCAGGTAA
 
Protein sequence
MKQMLVGFHV VQARLRVDPN SLKSVYFDSG RRDRRMGDFL KQAEEILGER LHAADAERLH 
KLTGHDRHQG VVALAEKMAI VRTITEVVED VESTHEKPLF LILDGVTDPH NFGACLRVAD
GAGVDAAVIP KDRSASINAT VSKVSGGAAE VMPVITVTNL VRSMKEMQEA GVWLIGTDDE
ATKSIYDIDL TGSIAIVMGA EGEGMRRLTK ETCDELVRIP MQGVVSSLNV SVASGVCLYE
VLRQRLSKVT DKAAR