Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0683 |
Symbol | |
ID | 6182925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 593853 |
End bp | 594620 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641671338 |
Product | RNA methyltransferase, TrmH family, group 3 |
Protein accession | YP_001797533 |
Protein GI | 171463420 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0566] rRNA methylases |
TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 0.427045 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCAAA TGCTAGTTGG ATTTCATGTG GTGCAAGCGC GTTTACGTGT AGATCCCAAT AGCTTAAAGT CGGTGTACTT TGATTCTGGT CGGCGCGATA GACGCATGGG CGATTTCTTA AAGCAAGCCG AAGAGATTTT GGGAGAGCGT TTACATGCGG CTGATGCAGA ACGTTTGCAT AAGTTAACAG GACATGATCG GCACCAAGGC GTTGTTGCGT TAGCTGAAAA AATGGCTATC GTTCGAACTA TTACCGAGGT TGTTGAGGAT GTTGAGAGCA CACACGAGAA GCCCTTATTC TTGATATTAG ATGGCGTAAC AGATCCACAT AATTTTGGTG CCTGTCTGCG TGTAGCTGAC GGTGCTGGTG TAGATGCTGC TGTGATTCCT AAAGATCGTT CTGCATCAAT TAATGCTACT GTGAGTAAGG TTTCCGGTGG CGCAGCTGAA GTCATGCCAG TAATTACTGT TACTAACCTT GTTCGTAGTA TGAAAGAAAT GCAAGAAGCA GGTGTTTGGC TGATCGGTAC TGATGATGAG GCGACTAAAT CGATTTATGA CATCGACCTT ACTGGTTCTA TTGCAATAGT CATGGGTGCT GAAGGTGAGG GTATGCGTCG TTTGACAAAA GAAACCTGTG ATGAGCTTGT ACGCATCCCA ATGCAGGGCG TTGTTTCAAG CTTGAATGTG TCAGTTGCTA GTGGCGTATG CTTATATGAG GTATTAAGAC AGCGTCTATC CAAGGTAACT GACAAGGCTG CCAGGTAA
|
Protein sequence | MKQMLVGFHV VQARLRVDPN SLKSVYFDSG RRDRRMGDFL KQAEEILGER LHAADAERLH KLTGHDRHQG VVALAEKMAI VRTITEVVED VESTHEKPLF LILDGVTDPH NFGACLRVAD GAGVDAAVIP KDRSASINAT VSKVSGGAAE VMPVITVTNL VRSMKEMQEA GVWLIGTDDE ATKSIYDIDL TGSIAIVMGA EGEGMRRLTK ETCDELVRIP MQGVVSSLNV SVASGVCLYE VLRQRLSKVT DKAAR
|
| |