| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1003 |
|---|
| Symbol | |
|---|
| ID | 4069768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1266321 |
|---|
| End bp | 1267106 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637983010 |
|---|
| Product | RNA methyltransferase TrmH, group 3 |
|---|
| Protein accession | YP_590080 |
|---|
| Protein GI | 94968032 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.60779 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0289199 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGA TCTACGGTAT CCACCCGGTG AGCGAGGCGC TGAAGTCGCG CGGGCGCAGC
TTTCAGTATG TGGCGATTGC GAAGGACCGC ATGGATCCGC GGGTGCAGCG CATTGTTGAA
GACGCGCGCG AGTCCGGGAT CACGGTGCGC TTTTTGCCGC GCGATTTCCT GGACCGCACC
GCCAACACCA ACATGCACCA GGGCGTGATC GCGGTCACGT CGAAGAAGGA ATATCTCGAC
CTCGACGACA TTATCGAGAA GAAGCGCGGC GAACATGCGT TCGTGGTGGT GCTCGACGGG
ATTGAAGATC CGCACAATCT GGGCGCGTTG ATTCGCAGCG CCGATGGCGC GGGCGTGGAC
GGCGTCGTAA TTCCCGAGCG GCGCGCCGTG GGCGTGACCG GTACGGCGAT GAAGGCCAGC
GCGGGGGCCG CGGAATACGT GCCGATCGCG CGCGTCACGA ACATTGCGCG GTCGATTGAA
GATTTGAAAG ACAAGTACAA CGTGTGGACC GTAGGACTGG ACGAGCGCGG CACGCAGAAT
TACGACGAGA TCGACTACAA CATGAGCCTC GCGCTGGTGC TCGGCGCGGA AGGCAAGGGC
CTGCACGATC TCGTGCGCAA GAAATGCGAT CTGCTGGTGA AAATCCCGAT GGCGGGCGAG
GTCTCGTCGC TTAATGTTTC CGTGGCCGGC GGCATCGTGA TGTACGAAGT TTCGCGGCAG
CGGCGCGCGA AGGTGGCGGG TGCCGGATCG CCGGGTACAA CGTCTAAAAA GAAAAACCGT
AAGTAG
|
|---|
| Protein sequence | MDVIYGIHPV SEALKSRGRS FQYVAIAKDR MDPRVQRIVE DARESGITVR FLPRDFLDRT
ANTNMHQGVI AVTSKKEYLD LDDIIEKKRG EHAFVVVLDG IEDPHNLGAL IRSADGAGVD
GVVIPERRAV GVTGTAMKAS AGAAEYVPIA RVTNIARSIE DLKDKYNVWT VGLDERGTQN
YDEIDYNMSL ALVLGAEGKG LHDLVRKKCD LLVKIPMAGE VSSLNVSVAG GIVMYEVSRQ
RRAKVAGAGS PGTTSKKKNR K
|
|---|
| |