More than 300 homologs were found in PanDaTox collection
for query gene CHU_0306 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008255  CHU_0306  TrmH family tRNA methyltransferase  100 
 
 
268 aa  550  1e-155  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2661  RNA methyltransferase, TrmH family, group 3  53.15 
 
 
256 aa  283  2.0000000000000002e-75  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3136  RNA methyltransferase, TrmH family, group 3  50.19 
 
 
276 aa  272  4.0000000000000004e-72  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2061  RNA methyltransferase, TrmH family, group 3  52.19 
 
 
254 aa  268  5e-71  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0954424 
 
 
-
 
NC_002950  PG1848  RNA methyltransferase  51.82 
 
 
249 aa  253  3e-66  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013162  Coch_0728  RNA methyltransferase, TrmH family, group 3  46.5 
 
 
244 aa  251  1e-65  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0406  RNA methyltransferase  45.15 
 
 
244 aa  238  5.999999999999999e-62  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0940631  n/a   
 
 
-
 
NC_010830  Aasi_1164  hypothetical protein  45.99 
 
 
246 aa  223  3e-57  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.2944 
 
 
-
 
NC_014230  CA2559_05650  putative tRNA:rRNA methyltransferase  41.18 
 
 
245 aa  212  7e-54  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2929  RNA methyltransferase, TrmH family, group 3  41.84 
 
 
263 aa  211  9e-54  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0405  RNA methyltransferase, TrmH family, group 3  37.3 
 
 
254 aa  174  1.9999999999999998e-42  Ammonifex degensii KC4  Bacteria  hitchhiker  0.0083776  n/a   
 
 
-
 
NC_013411  GYMC61_0088  RNA methyltransferase, TrmH family, group 3  37.24 
 
 
246 aa  171  2e-41  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_0092  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
245 aa  166  2.9999999999999998e-40  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000000607271  n/a   
 
 
-
 
NC_011830  Dhaf_0401  RNA methyltransferase, TrmH family, group 3  37.5 
 
 
246 aa  166  4e-40  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000436094  n/a   
 
 
-
 
NC_008346  Swol_2352  putative tRNA/rRNA methyltransferase YacO  34.71 
 
 
248 aa  165  5.9999999999999996e-40  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.177652  n/a   
 
 
-
 
NC_009012  Cthe_2060  RNA methyltransferase  32.55 
 
 
277 aa  163  3e-39  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1822  rRNA methylase  33.33 
 
 
249 aa  161  8.000000000000001e-39  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0112  RNA methyltransferase, TrmH family, group 3  35.56 
 
 
247 aa  161  9e-39  Bacillus cereus B4264  Bacteria  hitchhiker  0.0011476  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0086  RNA methyltransferase  35.98 
 
 
247 aa  161  1e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0239075  n/a   
 
 
-
 
NC_010424  Daud_0190  RNA methyltransferase  37.5 
 
 
251 aa  160  2e-38  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.153268  n/a   
 
 
-
 
NC_011772  BCG9842_B5214  RNA methyltransferase, TrmH family, group 3  35.56 
 
 
247 aa  160  2e-38  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000196945  unclonable  9.19298e-26 
 
 
-
 
NC_010730  SYO3AOP1_0003  RNA methyltransferase, TrmH family, group 3  37.35 
 
 
250 aa  160  2e-38  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3320  RNA methyltransferase, TrmH family, group 3  33.2 
 
 
315 aa  160  2e-38  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000000334493  n/a   
 
 
-
 
NC_011658  BCAH187_A0122  RNA methyltransferase, TrmH family, group 3  35.15 
 
 
247 aa  159  3e-38  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000258465  n/a   
 
 
-
 
NC_003909  BCE_0091  RNA methyltransferase  35.15 
 
 
247 aa  159  3e-38  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00797863  n/a   
 
 
-
 
NC_005945  BAS0091  RNA methyltransferase  35.15 
 
 
247 aa  159  3e-38  Bacillus anthracis str. Sterne  Bacteria  normal  0.678867  n/a   
 
 
-
 
NC_005957  BT9727_0088  tRNA/rRNA methyltransferase SpoU  35.15 
 
 
247 aa  159  3e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000158072  n/a   
 
 
-
 
NC_006274  BCZK0087  TrmH family tRNA methyltransferase  35.15 
 
 
247 aa  159  3e-38  Bacillus cereus E33L  Bacteria  normal  0.528227  n/a   
 
 
-
 
NC_011773  BCAH820_0102  RNA methyltransferase, TrmH family, group 3  35.15 
 
 
247 aa  159  3e-38  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.238e-61 
 
 
-
 
NC_007530  GBAA_0091  RNA methyltransferase  35.15 
 
 
247 aa  159  3e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000227809  n/a   
 
 
-
 
NC_009253  Dred_0196  RNA methyltransferase  34.58 
 
 
243 aa  159  3e-38  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00000588208  n/a   
 
 
-
 
NC_008820  P9303_15801  rRNA methylase  38.37 
 
 
536 aa  159  3e-38  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007516  Syncc9605_1155  RNA methyltransferase TrmH, group 3  34.91 
 
 
542 aa  159  4e-38  Synechococcus sp. CC9605  Bacteria  normal  0.623752  normal 
 
 
-
 
NC_008530  LGAS_0340  rRNA methylase  33.74 
 
 
251 aa  158  7e-38  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000065422  hitchhiker  0.000000457527 
 
 
-
 
NC_007644  Moth_2481  RNA methyltransferase TrmH, group 3  36.4 
 
 
246 aa  157  2e-37  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000000314444  hitchhiker  0.00338936 
 
 
-
 
NC_009513  Lreu_0305  RNA methyltransferase  33.88 
 
 
249 aa  155  7e-37  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000000127836  n/a   
 
 
-
 
NC_009674  Bcer98_0086  RNA methyltransferase  33.89 
 
 
247 aa  154  1e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00000284808  n/a   
 
 
-
 
NC_010718  Nther_0174  RNA methyltransferase, TrmH family, group 3  31.67 
 
 
247 aa  153  2.9999999999999998e-36  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000034032  normal 
 
 
-
 
NC_013165  Shel_19440  rRNA methylase, putative, group 3  35.66 
 
 
256 aa  152  4e-36  Slackia heliotrinireducens DSM 20476  Bacteria  normal  hitchhiker  0.000000129696 
 
 
-
 
NC_007517  Gmet_1356  RNA methyltransferase TrmH, group 3  35.12 
 
 
250 aa  152  7e-36  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000394989  hitchhiker  8.416419999999999e-20 
 
 
-
 
NC_010320  Teth514_0848  RNA methyltransferase  33.47 
 
 
247 aa  151  8.999999999999999e-36  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000264025  n/a   
 
 
-
 
NC_011899  Hore_00990  RNA methyltransferase  34.87 
 
 
244 aa  151  1e-35  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000314375  n/a   
 
 
-
 
NC_011146  Gbem_2889  RNA methyltransferase, TrmH family, group 3  34.02 
 
 
248 aa  150  2e-35  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0974  RNA methyltransferase, TrmH family, group 3  33.59 
 
 
316 aa  149  4e-35  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0793749  n/a   
 
 
-
 
NC_008025  Dgeo_2022  RNA methyltransferase TrmH, group 3  35.1 
 
 
246 aa  149  5e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1304  RNA methyltransferase TrmH, group 3  36.67 
 
 
652 aa  149  6e-35  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1336  RNA methyltransferase, TrmH family, group 3  33.6 
 
 
249 aa  149  7e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000822091 
 
 
-
 
NC_013204  Elen_2398  RNA methyltransferase, TrmH family, group 3  33.2 
 
 
248 aa  147  1.0000000000000001e-34  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.670056 
 
 
-
 
NC_011726  PCC8801_0265  RNA methyltransferase, TrmH family, group 3  32.42 
 
 
292 aa  148  1.0000000000000001e-34  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0264  RNA methyltransferase, TrmH family, group 3  32.42 
 
 
292 aa  148  1.0000000000000001e-34  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_0267  RNA methyltransferase, TrmH family, group 3  33.74 
 
 
246 aa  147  1.0000000000000001e-34  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000223613  normal  0.011395 
 
 
-
 
NC_008527  LACR_2065  rRNA methylase  35.66 
 
 
242 aa  147  1.0000000000000001e-34  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0971  rRNA methylase-like protein  34.73 
 
 
322 aa  148  1.0000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4146  RNA methyltransferase, TrmH family, group 3  31.2 
 
 
310 aa  147  2.0000000000000003e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012034  Athe_2043  RNA methyltransferase, TrmH family, group 3  34.85 
 
 
253 aa  146  4.0000000000000006e-34  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000129806  n/a   
 
 
-
 
NC_014165  Tbis_0507  RNA methyltransferase, TrmH family, group 3  35.95 
 
 
322 aa  145  5e-34  Thermobispora bispora DSM 43833  Bacteria  normal  0.533536  normal 
 
 
-
 
NC_002976  SERP0172  RNA methyltransferase  34.02 
 
 
249 aa  145  9e-34  Staphylococcus epidermidis RP62A  Bacteria  normal  0.0806813  n/a   
 
 
-
 
NC_010001  Cphy_3322  RNA methyltransferase  35.29 
 
 
248 aa  144  1e-33  Clostridium phytofermentans ISDg  Bacteria  normal  0.752431  n/a   
 
 
-
 
NC_011884  Cyan7425_2629  RNA methyltransferase, TrmH family, group 3  32.05 
 
 
387 aa  144  2e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.821515 
 
 
-
 
NC_008699  Noca_4020  RNA methyltransferase  33.2 
 
 
314 aa  144  2e-33  Nocardioides sp. JS614  Bacteria  normal  0.980605  n/a   
 
 
-
 
NC_008528  OEOE_1425  rRNA methylase  33.47 
 
 
233 aa  143  3e-33  Oenococcus oeni PSU-1  Bacteria  hitchhiker  0.0000022514  n/a   
 
 
-
 
NC_002939  GSU1462  RNA methyltransferase  33.06 
 
 
245 aa  143  4e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.0405731  n/a   
 
 
-
 
NC_011126  HY04AAS1_0313  RNA methyltransferase, TrmH family, group 3  33.47 
 
 
251 aa  142  7e-33  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000179001  n/a   
 
 
-
 
NC_007335  PMN2A_0262  RNA methyltransferase TrmH, group 3  35.25 
 
 
416 aa  141  9e-33  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1408  RNA methyltransferase  37.94 
 
 
255 aa  140  9.999999999999999e-33  Marinomonas sp. MWYL1  Bacteria  normal  0.0243869  normal  0.695011 
 
 
-
 
NC_014248  Aazo_2285  TrmA family RNA methyltransferase  32.79 
 
 
323 aa  140  9.999999999999999e-33  'Nostoc azollae' 0708  Bacteria  normal  0.240402  n/a   
 
 
-
 
NC_011145  AnaeK_2280  RNA methyltransferase, TrmH family, group 3  33.6 
 
 
256 aa  140  9.999999999999999e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_09311  RNA methyltransferase TrmH, group 3  35.25 
 
 
442 aa  141  9.999999999999999e-33  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.0566162 
 
 
-
 
NC_007413  Ava_4413  RNA methyltransferase TrmH, group 3  32.39 
 
 
327 aa  140  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0619  RNA methyltransferase, TrmH family, group 3  35.1 
 
 
248 aa  140  1.9999999999999998e-32  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0568  RNA methyltransferase  33.61 
 
 
248 aa  140  3e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.927994  n/a   
 
 
-
 
NC_009487  SaurJH9_0554  RNA methyltransferase  33.61 
 
 
248 aa  140  3e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.850775  n/a   
 
 
-
 
NC_009664  Krad_0912  RNA methyltransferase, TrmH family, group 3  34.68 
 
 
321 aa  139  3.9999999999999997e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_008009  Acid345_1003  RNA methyltransferase TrmH, group 3  36.48 
 
 
261 aa  139  3.9999999999999997e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.60779  normal  0.0289199 
 
 
-
 
NC_011891  A2cp1_2368  RNA methyltransferase, TrmH family, group 3  33.6 
 
 
256 aa  139  3.9999999999999997e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.900248  n/a   
 
 
-
 
NC_009675  Anae109_2230  RNA methyltransferase  33.61 
 
 
245 aa  139  3.9999999999999997e-32  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0204347 
 
 
-
 
NC_008726  Mvan_5337  RNA methyltransferase  31.85 
 
 
314 aa  139  6e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1867  RNA methyltransferase, TrmH family, group 3  33.61 
 
 
246 aa  139  7e-32  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0590  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
247 aa  137  2e-31  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0629521 
 
 
-
 
NC_009943  Dole_1909  RNA methyltransferase  33.88 
 
 
256 aa  137  2e-31  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000520024  n/a   
 
 
-
 
NC_008312  Tery_2313  RNA methyltransferase  31.8 
 
 
288 aa  137  2e-31  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0718596 
 
 
-
 
NC_013174  Jden_2067  RNA methyltransferase, TrmH family, group 3  33.2 
 
 
326 aa  137  2e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1583  RNA methyltransferase TrmH, group 3  33.2 
 
 
256 aa  136  4e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.780301  n/a   
 
 
-
 
NC_011901  Tgr7_0906  RNA methyltransferase, TrmH family, group 3  36.8 
 
 
248 aa  135  5e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0533  RNA methyltransferase TrmH, group 3  36.48 
 
 
255 aa  135  6.0000000000000005e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0666066 
 
 
-
 
NC_013170  Ccur_03790  rRNA methylase, putative, group 3  33.33 
 
 
300 aa  135  6.0000000000000005e-31  Cryptobacterium curtum DSM 15641  Bacteria  hitchhiker  0.0000601463  normal  0.201311 
 
 
-
 
NC_014148  Plim_1765  RNA methyltransferase, TrmH family, group 3  33.8 
 
 
271 aa  135  7.000000000000001e-31  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.560778  n/a   
 
 
-
 
NC_007963  Csal_0887  RNA methyltransferase TrmH, group 3  35.12 
 
 
261 aa  135  9e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.986853  n/a   
 
 
-
 
NC_009439  Pmen_0644  RNA methyltransferase  33.88 
 
 
250 aa  135  9e-31  Pseudomonas mendocina ymp  Bacteria  normal  hitchhiker  0.000634261 
 
 
-
 
NC_007512  Plut_1616  RNA methyltransferase TrmH, group 3  32.24 
 
 
248 aa  134  9.999999999999999e-31  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.439996 
 
 
-
 
NC_008261  CPF_2734  RNA methyltransferase  30.08 
 
 
289 aa  134  9.999999999999999e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_0122  tRNA/rRNA methyltransferase  32.37 
 
 
247 aa  134  9.999999999999999e-31  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0712  RNA methyltransferase, TrmH family, group 3  30.47 
 
 
306 aa  134  1.9999999999999998e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2119  RNA methyltransferase TrmH, group 3  31.2 
 
 
519 aa  134  1.9999999999999998e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.383182 
 
 
-
 
NC_013093  Amir_0359  RNA methyltransferase, TrmH family, group 3  35.12 
 
 
321 aa  134  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2172  RNA methyltransferase TrmH, group 3  34.58 
 
 
237 aa  134  1.9999999999999998e-30  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0146478  n/a   
 
 
-
 
NC_008639  Cpha266_0572  RNA methyltransferase  33.6 
 
 
252 aa  134  1.9999999999999998e-30  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2387  RNA methyltransferase  33.47 
 
 
245 aa  134  1.9999999999999998e-30  Marinobacter aquaeolei VT8  Bacteria  normal  0.939992  n/a   
 
 
-
 
NC_007912  Sde_1055  tyrosyl-tRNA synthetase, class Ib  35.54 
 
 
248 aa  133  3e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.932424 
 
 
-
 
NC_009483  Gura_2796  RNA methyltransferase  33.47 
 
 
242 aa  132  3.9999999999999996e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.125421  n/a   
 
 
-
 
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