Gene CHU_0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0306 
SymboltrmH 
ID4186872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp364633 
End bp365439 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content43% 
IMG OID638070315 
ProductTrmH family tRNA methyltransferase 
Protein accessionYP_676937 
Protein GI110636730 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID[TIGR00186] rRNA methylase, putative, group 3 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAGAA ACTACCCAAA GAAACGGTTT TCTTCGTCAT ACGATGAAAA CAAACCTGCT 
AACGACAAAG ATATGATTTT CGGGATCCGC CCGGTGATTG AGGCTCTGGA AGCTGGCAAA
GAAATCGACA AGATCTTAAT ACAGCGAAAT ATTGAACAGG CAGTTGTTCA GGAATTGTTT
GAATTAGCGA ATCGTGTTAA AGTACCTGTG ATAAAAGTTC CGGTTGAAAA ACTGGACCGC
GTAACGCGCA AAAATCACCA GGGTGTTATT TGTTATTTAT CGGCTATCAA TTTTGCTTCG
TTAGATAACA TCGTATCTGC CTGTTTTGAA AGCGGCAAAA ACCCATTGCT GGTAATGCTT
GACCGTGTAA CAGATGTACG TAATTTTGGT GCAGTTGCAC GGAGTGCAGA GTGTTTGGGA
GTGGATGCCA TGATCGTTCC TTCAAGAGGT GCCGCTCAAT TAAACAGCGA TGCGGTTAAA
ACATCTGCCG GTGCGTTATA CCACATTCCG GTTTGCCGTG TGGATCATTT GATCGATACG
GTAAAATATC TTAAACAGTG CGGCCTGCGC ATTATCGCAT GTTCAGAAAA AGCAAGCATC
AATGTATACG ACGAAGATCT CACCGACCCA TGTGTTATTC TGATGGGCAG CGAAGAAGAT
GGAATCAGCA TGGACCTGCT GCGGTATGCA GATGCACATG TTACCATACC TATGAGCGGA
CATATTAACT CTTTGAATGT TTCCGTTGCA ACCGGCATGA TCTTATCAGA AGTAACAAGA
CAGCGATTGA AACAACAATC AAAATAG
 
Protein sequence
MDRNYPKKRF SSSYDENKPA NDKDMIFGIR PVIEALEAGK EIDKILIQRN IEQAVVQELF 
ELANRVKVPV IKVPVEKLDR VTRKNHQGVI CYLSAINFAS LDNIVSACFE SGKNPLLVML
DRVTDVRNFG AVARSAECLG VDAMIVPSRG AAQLNSDAVK TSAGALYHIP VCRVDHLIDT
VKYLKQCGLR IIACSEKASI NVYDEDLTDP CVILMGSEED GISMDLLRYA DAHVTIPMSG
HINSLNVSVA TGMILSEVTR QRLKQQSK