More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2276 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_4170  HAD family hydrolase  79.44 
 
 
787 aa  1104    Frankia sp. EAN1pec  Bacteria  normal  0.243579  normal  0.356217 
 
 
-
 
NC_007777  Francci3_2276  HAD family hydrolase  100 
 
 
819 aa  1592    Frankia sp. CcI3  Bacteria  hitchhiker  0.0000198235  hitchhiker  0.000271662 
 
 
-
 
NC_009664  Krad_4168  Male sterility domain  49.21 
 
 
764 aa  675    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1998  HAD family hydrolase  49.24 
 
 
799 aa  653    Nocardioides sp. JS614  Bacteria  normal  0.15184  n/a   
 
 
-
 
NC_013521  Sked_19450  phosphoserine phosphatase  47.27 
 
 
778 aa  587  1e-166  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27140  HAD-superfamily subfamily IB hydrolase, TIGR01490  43.59 
 
 
768 aa  561  1e-158  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2112  HAD family hydrolase  40.72 
 
 
750 aa  493  9.999999999999999e-139  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1432  HAD-superfamily subfamily IB hydrolase, TIGR01490  40.44 
 
 
770 aa  456  1e-127  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.438652  n/a   
 
 
-
 
NC_013440  Hoch_3248  AMP-dependent synthetase and ligase  32.28 
 
 
1542 aa  202  3e-50  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.151013 
 
 
-
 
NC_008740  Maqu_2220  hypothetical protein  29.45 
 
 
513 aa  189  1e-46  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1212  AMP-dependent synthetase and ligase  32.07 
 
 
1557 aa  175  2.9999999999999996e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.97717  normal 
 
 
-
 
NC_007760  Adeh_1165  long-chain-fatty-acid CoA ligase  32.98 
 
 
1537 aa  173  1e-41  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1224  AMP-dependent synthetase and ligase  33.51 
 
 
1538 aa  173  1e-41  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1326  AMP-dependent synthetase and ligase  33.51 
 
 
1538 aa  172  3e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.683911  n/a   
 
 
-
 
NC_013440  Hoch_3628  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.58 
 
 
232 aa  117  7.999999999999999e-25  Haliangium ochraceum DSM 14365  Bacteria  normal  0.856585  hitchhiker  0.00143877 
 
 
-
 
NC_007760  Adeh_1167  HAD family hydrolase  32.87 
 
 
225 aa  105  5e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1328  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.87 
 
 
225 aa  103  9e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1226  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.87 
 
 
225 aa  103  1e-20  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1214  HAD family hydrolase  32.87 
 
 
225 aa  103  2e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0597827  normal 
 
 
-
 
NC_002977  MCA2087  HAD family hydrolase  30.14 
 
 
220 aa  87.4  0.000000000000001  Methylococcus capsulatus str. Bath  Bacteria  hitchhiker  0.00266008  n/a   
 
 
-
 
NC_013124  Afer_1925  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.41 
 
 
273 aa  87  0.000000000000001  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4644  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.88 
 
 
286 aa  87  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.460145 
 
 
-
 
NC_013757  Gobs_0590  HAD-superfamily subfamily IB hydrolase, TIGR01490  37.09 
 
 
280 aa  84.7  0.000000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.841556  n/a   
 
 
-
 
NC_013159  Svir_35940  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.05 
 
 
280 aa  84.3  0.000000000000008  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.330222  normal  0.156171 
 
 
-
 
NC_013441  Gbro_4653  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.04 
 
 
493 aa  83.6  0.00000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0274  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.14 
 
 
270 aa  83.2  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6363  HAD-superfamily subfamily IB hydrolase TIGR01490  36.49 
 
 
272 aa  82.8  0.00000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.499829  normal 
 
 
-
 
NC_009338  Mflv_2564  HAD family hydrolase  34.9 
 
 
570 aa  82.4  0.00000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.341145  normal  0.242767 
 
 
-
 
NC_013521  Sked_07130  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.6 
 
 
311 aa  82.4  0.00000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.371793 
 
 
-
 
NC_007912  Sde_3483  hypothetical protein  29.33 
 
 
207 aa  80.1  0.0000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.129655  normal  0.0813379 
 
 
-
 
NC_008699  Noca_0362  HAD family hydrolase  33.74 
 
 
289 aa  80.1  0.0000000000001  Nocardioides sp. JS614  Bacteria  hitchhiker  0.00108694  n/a   
 
 
-
 
NC_014165  Tbis_0255  HAD-superfamily hydrolase  31.42 
 
 
286 aa  79.7  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.185675  normal 
 
 
-
 
NC_008340  Mlg_0426  HAD family hydrolase  30.97 
 
 
231 aa  79.7  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0139155 
 
 
-
 
NC_013530  Xcel_0438  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.22 
 
 
268 aa  80.1  0.0000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2629  putative hydrolase protein  33.33 
 
 
220 aa  79.3  0.0000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.283045  normal 
 
 
-
 
NC_011886  Achl_3098  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.68 
 
 
272 aa  79  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_0054  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.1 
 
 
281 aa  78.2  0.0000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0193  HAD family hydrolase  27.8 
 
 
518 aa  78.2  0.0000000000006  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0459706  normal 
 
 
-
 
NC_009380  Strop_4041  HAD family hydrolase  34.93 
 
 
267 aa  77.8  0.0000000000007  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal 
 
 
-
 
NC_007333  Tfu_2722  HAD family hydrolase  30.74 
 
 
305 aa  77.8  0.0000000000007  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3299  HAD family hydrolase  32.42 
 
 
272 aa  77.8  0.0000000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2187  HAD family hydrolase  33.59 
 
 
233 aa  77  0.000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0481  HAD family hydrolase  35.37 
 
 
295 aa  77  0.000000000001  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0346  XRE family transcriptional regulator  29.25 
 
 
218 aa  77.4  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.923957  normal  0.0904875 
 
 
-
 
NC_008825  Mpe_A3021  hypothetical protein  34.88 
 
 
222 aa  76.3  0.000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.344773  normal 
 
 
-
 
NC_014151  Cfla_2740  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.47 
 
 
288 aa  76.6  0.000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0297875 
 
 
-
 
NC_008740  Maqu_0813  HAD family hydrolase  27.51 
 
 
228 aa  76.6  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00498763  n/a   
 
 
-
 
NC_009565  TBFG_12504  bifunctionnal transmembrane phospholipid biosynthesis enzyme plsC: L-3-phosphoserine phosphatase + 1-acyl-sn-glycerol-3-phosphate acyltransferase  30.83 
 
 
580 aa  75.9  0.000000000003  Mycobacterium tuberculosis F11  Bacteria  normal  0.088131  normal 
 
 
-
 
NC_008726  Mvan_4075  HAD family hydrolase  33.56 
 
 
525 aa  75.9  0.000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.588653 
 
 
-
 
NC_008789  Hhal_0886  HAD family hydrolase  36.09 
 
 
227 aa  75.5  0.000000000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4844  HAD family hydrolase  32.43 
 
 
218 aa  75.1  0.000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2929  HAD family hydrolase  34.92 
 
 
221 aa  75.1  0.000000000005  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.0000000550566  normal 
 
 
-
 
NC_009953  Sare_4432  HAD family hydrolase  34.25 
 
 
270 aa  74.7  0.000000000006  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000343409 
 
 
-
 
NC_007948  Bpro_3562  HAD family hydrolase  35.07 
 
 
247 aa  74.7  0.000000000007  Polaromonas sp. JS666  Bacteria  normal  normal  0.271633 
 
 
-
 
NC_008463  PA14_49620  phosphoserine phosphatase  31.86 
 
 
217 aa  74.3  0.000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00503624  normal 
 
 
-
 
BN001305  ANIA_05348  conserved hypothetical protein  25.94 
 
 
413 aa  73.9  0.00000000001  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.0521089  normal  0.0191103 
 
 
-
 
NC_008781  Pnap_2992  HAD family hydrolase  36.3 
 
 
235 aa  73.9  0.00000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.623044 
 
 
-
 
NC_007484  Noc_2017  HAD family hydrolase  32.84 
 
 
242 aa  73.6  0.00000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6135  HAD family hydrolase  33.13 
 
 
294 aa  73.9  0.00000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.415462 
 
 
-
 
NC_013174  Jden_2226  HAD-superfamily subfamily IB hydrolase, TIGR01490  30 
 
 
282 aa  72.8  0.00000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.98055 
 
 
-
 
NC_013422  Hneap_0991  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.12 
 
 
218 aa  73.6  0.00000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_33380  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.74 
 
 
265 aa  72.4  0.00000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.156612  normal 
 
 
-
 
NC_009365  OSTLU_26514  predicted protein  27.9 
 
 
262 aa  72.4  0.00000000003  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.0100496  normal  0.0236046 
 
 
-
 
NC_013530  Xcel_0320  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.77 
 
 
258 aa  72.4  0.00000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.369561  n/a   
 
 
-
 
NC_009338  Mflv_3285  HAD family hydrolase  28.44 
 
 
249 aa  72  0.00000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.651915 
 
 
-
 
NC_013889  TK90_0395  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.31 
 
 
228 aa  72.4  0.00000000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.771269  normal  0.534217 
 
 
-
 
NC_012791  Vapar_3061  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.93 
 
 
222 aa  71.6  0.00000000005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5379  HAD family hydrolase  33.87 
 
 
218 aa  71.6  0.00000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.396939  normal  0.0228377 
 
 
-
 
NC_013440  Hoch_6034  HAD-superfamily subfamily IB hydrolase, TIGR01490  36.36 
 
 
222 aa  71.6  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1315  HAD family hydrolase  32 
 
 
228 aa  71.2  0.00000000006  Burkholderia thailandensis E264  Bacteria  normal  0.171844  n/a   
 
 
-
 
NC_009656  PSPA7_4234  hypothetical protein  33.55 
 
 
217 aa  71.6  0.00000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2319  HAD family hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1091  HAD-superfamily subfamily IB hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  0.494878  n/a   
 
 
-
 
NC_009076  BURPS1106A_3303  HAD-superfamily subfamily IB hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3313  HAD family hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3270  HAD-superfamily subfamily IB hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.487374  n/a   
 
 
-
 
NC_007614  Nmul_A2615  HAD family hydrolase  35 
 
 
220 aa  71.2  0.00000000007  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0614  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.96 
 
 
255 aa  71.2  0.00000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.160629  normal  0.0475682 
 
 
-
 
NC_008785  BMASAVP1_A0508  HAD-superfamily subfamily IB hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2198  HAD-superfamily subfamily IB hydrolase  35.38 
 
 
228 aa  71.2  0.00000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  0.409073  n/a   
 
 
-
 
NC_013947  Snas_6219  HAD-superfamily subfamily IB hydrolase TIGR01490  30.18 
 
 
289 aa  71.2  0.00000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011671  PHATR_44189  predicted protein  26.71 
 
 
1560 aa  71.2  0.00000000008  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_010501  PputW619_0318  HAD family hydrolase  31.54 
 
 
218 aa  70.9  0.00000000008  Pseudomonas putida W619  Bacteria  normal  normal  0.13474 
 
 
-
 
NC_009439  Pmen_4219  HAD family hydrolase  35.65 
 
 
217 aa  70.9  0.00000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3954  HAD family hydrolase  31.37 
 
 
228 aa  70.9  0.00000000009  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0220849 
 
 
-
 
NC_009953  Sare_0418  HAD family hydrolase  32.47 
 
 
312 aa  70.9  0.00000000009  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00884178 
 
 
-
 
NC_009656  PSPA7_1870  hypothetical protein  29.39 
 
 
216 aa  70.9  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.531495  n/a   
 
 
-
 
NC_004578  PSPTO_5286  HAD-superfamily hydrolase  28.12 
 
 
218 aa  70.5  0.0000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4446  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.53 
 
 
290 aa  70.5  0.0000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0515  HAD-superfamily subfamily IB hydrolase, TIGR01490  27.73 
 
 
289 aa  69.3  0.0000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.589704  n/a   
 
 
-
 
NC_011992  Dtpsy_2419  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.48 
 
 
233 aa  69.3  0.0000000003  Acidovorax ebreus TPSY  Bacteria  normal  0.858824  n/a   
 
 
-
 
NC_008782  Ajs_2992  HAD family hydrolase  35.48 
 
 
233 aa  69.3  0.0000000003  Acidovorax sp. JS42  Bacteria  normal  0.0456424  normal  0.731266 
 
 
-
 
NC_009524  PsycPRwf_0837  HAD family hydrolase  31.62 
 
 
231 aa  69.3  0.0000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.883121 
 
 
-
 
NC_010524  Lcho_0674  HAD family hydrolase  34.48 
 
 
227 aa  68.9  0.0000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007963  Csal_2578  HAD family hydrolase  35.11 
 
 
218 aa  68.9  0.0000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0916  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.71 
 
 
297 aa  68.9  0.0000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1316  HAD family hydrolase  31.43 
 
 
241 aa  68.6  0.0000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.021557  n/a   
 
 
-
 
NC_014210  Ndas_4355  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.42 
 
 
262 aa  68.2  0.0000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.571582 
 
 
-
 
NC_007947  Mfla_0520  HAD family hydrolase  27.85 
 
 
220 aa  68.2  0.0000000006  Methylobacillus flagellatus KT  Bacteria  normal  0.0927887  normal 
 
 
-
 
NC_014158  Tpau_3910  HAD-superfamily subfamily IB hydrolase  25.91 
 
 
284 aa  67.8  0.0000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
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