| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0346 |
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| Symbol | |
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| ID | 3964812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 430468 |
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| End bp | 431124 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919409 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_525822 |
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| Protein GI | 90019995 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0560] Phosphoserine phosphatase |
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| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.923957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0904875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGACACTCG CCCTTTTTGA TTTAGACAAC ACCCTGCTAG CAGGCGACAG TGACCACAGC
TGGGGAGAAT TCCTTATTCA CAAGGGCATT GTAGACGCCA AAGCCTATGG CAAGGCCAAC
GATGCCTTCT TCGAAGATTA CAAAAACGGC ACGTTAGATA TAGTGGCGTA TCAAGAGTTT
GCTTTGACAG CACTTATACC GCTTGATTCC GCGCAAAGGA AACAATTGCA CAATGAATTT
ATGGCGCAAG TTATTACCCC AATGATGCAA CCCAAAGCGG TTAAACTTAT TGAGAAGCAC
CGCCAACAAG GTGATACATT AGTTATTATC ACTGCAACTA ACAGTTTTGT GACCGGCCCT
ATAGCCACCG CCCTTGGAAT TGATACCCTA CTGGCTACCG AACCTGAGAT TATAGATAGC
ATGTTCACCG GCAAGATTGT GGGAATACCC TGCTTTCAAG AGGGTAAAAT TGTTAAGCTA
AACGAATGGC TAAGTACAAC AGGCCACTCG CTAGATGGCG CCTGGTTTTA CAGCGATTCC
GCCAACGACC TGCCCCTGTT AGAACGGGTG GCAAACCCAG TAGCTGTAGA CCCAGACGAG
CGCTTGCTAA AGCACGCCAC AGAGCAACAA TGGCCTGTTA TCTCGTTGCG CGATTAA
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| Protein sequence | MTLALFDLDN TLLAGDSDHS WGEFLIHKGI VDAKAYGKAN DAFFEDYKNG TLDIVAYQEF
ALTALIPLDS AQRKQLHNEF MAQVITPMMQ PKAVKLIEKH RQQGDTLVII TATNSFVTGP
IATALGIDTL LATEPEIIDS MFTGKIVGIP CFQEGKIVKL NEWLSTTGHS LDGAWFYSDS
ANDLPLLERV ANPVAVDPDE RLLKHATEQQ WPVISLRD
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