| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4170 |
|---|
| Symbol | |
|---|
| ID | 5672525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4955996 |
|---|
| End bp | 4958359 |
|---|
| Gene Length | 2364 bp |
|---|
| Protein Length | 787 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641243043 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001508460 |
|---|
| Protein GI | 158315952 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase
[COG3320] Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.243579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.356217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGCTGC GCGAGCGGCT CGCGGGCAGG CGTGTGTTCG TGACCGGGGT GACCGGGTTC
GTCGGTGAGG CGCTGTTGGA GCGGCTGCTC TCGGAGTTCC CGGACACCCA GGTCGTGGCG
CTCGTGCGGC CCCGGGGCAG CCATTCGGGG ATGGCCCGGT TGGAGCGGAT GACCCGTAAG
CCGGCGTTCG CCGGGCTGCG GGAACGGTTG GGCCGTGAGG GGCTGGCGGC GCGGCTGGCG
GCGCAGGTGC GGGTCATCGA GGGTGACCTG GCCAGTATGG GTGAGTTGCC CGCCGACCTG
GACGTGGTGA TCCACTGCGC CGGGGAGGTG TCGTTCGACC CGGCGATCGA CGAGGGGTTC
GCGACGAACC TGGGCGGGGT GCAGGAGCTG CTGCGCGCGG TGCGCGCTGC CGGGGCCCGC
CCGCATCTGG TGCACGTGTC GACCGCCTAT GTCGCCGGGT TGCGTTCGGG GCACATCGCC
GAGGGCCGGC TGGCCCACGA GGTGGACTGG GCGGCGGAGC AGGCGTCGGC CGCGCGGGCC
CGCCACGCCG CGGAGGACGC GTCGCGCTCG CCGGAGAACT CGGCGCGGTT CCGCGAGCAG
GCGTCGGCCG AGCATGTGCG GGCCGGCGCG CAGACGGTGT CGGCGCAGGC GGAGGCGGCG
CGGCGGGCGT GGGTGGCGGC GCGGTTGGTC GCCGCGGGCT CCGAACGCGC GCAGGTGCTG
GGCTGGACGG ACGCGTACAC GTTCACCAAG GCGTTGGGTG AGCGGTATCT GGAGGACTCC
CACGGCGATC TGCCGTTGAC GATCGTCCGC CCGTCGATCA TCGAGAGCGC GCTGGCGAAG
CCGTTCCCGG GGTGGATCGA GGGGTTCAAG ATGGCCGAGC CGCTGATCCT GGCGTTCGGC
CGCGGGGAGC TGCCGGACTT CCCTGCGTCC CCGGATGCCG TCGTCGACAT CATCCCGGTG
GATCTGGTCG TCAACGCGCT GCTGGCGGCG GCGGCGAGCC CCCCGCCGCC GGAGCGCCCG
GCCTATTACA CGGTGTGTTC GGGGTTCCGG AACCCGCTGC TGTTCCGTGA CCTCTACGAC
TATGTGCGGG GCTATTTCCT GGCCGATCCG CTGCCGCGGC GCGGCCGCGG GCATATCGGG
GTTCCTGAGT GGCCGTTCGC CGGGGCGGTG GCGGTGGAGG CGAAGCTGCG CCGCGGGGAG
AAGGCGGTGG AGTGGGCGAA CCGGGTGTTG GCGCACGCGC CGCGTTCGGA GCGGGTTCGC
CGGCTGGCCG TCGACTTGGA ACGTACCGAG GGGCGGGTGG CGTTCCTACG CCGCTACTCC
GATGTGTACC GGGCGTACAC GAAGGCCGAG CTGGTCTACG TCGACGACGC CACCGCGGCG
CTGCACGCGG CGATGGACCC GGCCGACCAG GTCGACTTCG GGTTCGACCC GGCGTGTTTC
GACTGGCGGC ACTACCTGCA GGACGTGCAC TGCCCGGCGG TGACGCAGGT GCTGCGCCGG
CCGCGCGACG CCGCCCCGGC GCGGCGGATG GCCCGCAACC TCACCGCCGG CGAGGGGGTG
CTGGCCGTGT TCGACCTGGA CGGGACGCTG GTGTCCTCGA CGGTGGTCGA GTCGTATCTG
TGGCTGCGGC TGGCCGACGG CGACGTCGGG GAACGGGCCC GGGAGCTGGT GTCGCTGGCG
CGGGCACTGC CGGGGTATCT GCGTGCCGAG CGCCGCGACC GGGGGCATCT GATTCGCTCG
GTGTACGGCC GGTACGCCGG CGCCGACCCG GTGGAGCTGG CCCGGGTCGT CGACGAGGTC
GCGGCGGATG TGGTGTTGCG GCGGGTGAAA CCGGCGGCGG TGCGCCGTGT GCGGGAGCAT
CGCGCGGCCG GGCATCGCAC CGTGCTGTTG ACCGGGGCGG TCGATGTGCT GACCCGTCCG
CTGGCGCCGT TGTTCGACGA GATCGTCGCG ACCGGCCTGG AAGTCGGCGC GGATGGCCGG
TACACGGGAC GGTTGTTGTC GTCGCCGCTG GTCGGGGATG CTCGGGCGGC GTTCGTGGAT
CATTACGCGC GGCGCCGGGG GGCGGACCTG TCCGCGTCGT GGGCGTACGC GGACAGCCTG
TCGGATCTGC CGATGCTGCG CACGGTGGGC AATCCGGTGG CGGTGAACCC GGATGTGGCG
TTGCACAAGG TGGCGCGGGG GGCGGGCTGG CCGATCGAGG AGTGGCCGTC GACGCCGGGT
GAGCCGCGGC TGATGGTCGC CAGCCGCGCT GAGCGGGGCC TGTTCGCCGC GGCGGCCCGC
GCCCGGGTTG CCGCGGGCGG CCTGTCAGGG TCGGGGTCGG GTGGGAGTGG TGTTGTGCGG
GTGGAAGTGG GTGAGGGCCG GTGA
|
|---|
| Protein sequence | MGLRERLAGR RVFVTGVTGF VGEALLERLL SEFPDTQVVA LVRPRGSHSG MARLERMTRK
PAFAGLRERL GREGLAARLA AQVRVIEGDL ASMGELPADL DVVIHCAGEV SFDPAIDEGF
ATNLGGVQEL LRAVRAAGAR PHLVHVSTAY VAGLRSGHIA EGRLAHEVDW AAEQASAARA
RHAAEDASRS PENSARFREQ ASAEHVRAGA QTVSAQAEAA RRAWVAARLV AAGSERAQVL
GWTDAYTFTK ALGERYLEDS HGDLPLTIVR PSIIESALAK PFPGWIEGFK MAEPLILAFG
RGELPDFPAS PDAVVDIIPV DLVVNALLAA AASPPPPERP AYYTVCSGFR NPLLFRDLYD
YVRGYFLADP LPRRGRGHIG VPEWPFAGAV AVEAKLRRGE KAVEWANRVL AHAPRSERVR
RLAVDLERTE GRVAFLRRYS DVYRAYTKAE LVYVDDATAA LHAAMDPADQ VDFGFDPACF
DWRHYLQDVH CPAVTQVLRR PRDAAPARRM ARNLTAGEGV LAVFDLDGTL VSSTVVESYL
WLRLADGDVG ERARELVSLA RALPGYLRAE RRDRGHLIRS VYGRYAGADP VELARVVDEV
AADVVLRRVK PAAVRRVREH RAAGHRTVLL TGAVDVLTRP LAPLFDEIVA TGLEVGADGR
YTGRLLSSPL VGDARAAFVD HYARRRGADL SASWAYADSL SDLPMLRTVG NPVAVNPDVA
LHKVARGAGW PIEEWPSTPG EPRLMVASRA ERGLFAAAAR ARVAAGGLSG SGSGGSGVVR
VEVGEGR
|
|---|
| |