| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0481 |
|---|
| Symbol | |
|---|
| ID | 3903001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 563100 |
|---|
| End bp | 563987 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877812 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_479596 |
|---|
| Protein GI | 86739196 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGTGC GACGACGCAG GGACCTGGCC ACGACGAGGC AGGCCGCCGA GGCCGCCGCG
ATCGCCGCCT TGAAGGTCGC GGCCGAGGAG GTTCCGCGGG CTCCGCTGGA CGAGTCGGCG
GCCGCGTTCT TCGACGTGGA CAACACCATG ATGGCGGGCG CCTCGATCTT CTACTTCGCC
CGCGGCCTGG CCGCCCGGGA CTTCTTCAAC TCGCGTGACC TGATCCGGTT CGGCTGGCAG
CACATCACCT ACCGGCTGCG TGGGCTCGAG GACCCGAGCG GCATCCGGGA TGCTCGGGAG
ACCGCGCTTG CCTTCGTCGC CGGGCGCACG GTGGCCGAGA TCGTCCGTTA CGGCGAGGAG
ATCTACGACG AACGGATGGC CGAGCAGATC TACTCGGGTA CGCACGCGCT CGCCCAGCAG
CACCTTGACG CGGGCCAGCG AGTGTGGCTG GTCACGGCCA CCCCGGTCGA GCTCGCCTCG
GTCATCGCCC GGCGGCTGAA CCTCACCGGC GCCCTCGGCA CGGTCAGTGA GGTCTCCGCC
GAGGGCACCT ACACCGGCCA CCTGGTCGGC GGCCTGCTGC ACGGCCAGGC GAAGGCCGAG
GCCGTGCAGG CGCTCGCCGA GCGGGAGGGC CTGGACCTGT CGCGGTGCTG GGCCTACTCG
GACTCGATCA ACGATCTGCC CATGCTCTCC CTGGTGGGCC ACCCGGTCGC GATCAACCCG
GATCCGGACC TGAAGACCGT GGCCCGGGAA CGCGAATGGC CGATCAAGGA CTTTCGCACG
GCCCGCAAGG CAGCCAAGAT CGGCATTCCG ACGGCAGCCG GGGTGGGCGC GCTCGCCGGC
GGGGTCGCCG CCGGCATGGC GTTGCGGCGC CGGGCCGCGG GCGCCTAG
|
|---|
| Protein sequence | MRVRRRRDLA TTRQAAEAAA IAALKVAAEE VPRAPLDESA AAFFDVDNTM MAGASIFYFA
RGLAARDFFN SRDLIRFGWQ HITYRLRGLE DPSGIRDARE TALAFVAGRT VAEIVRYGEE
IYDERMAEQI YSGTHALAQQ HLDAGQRVWL VTATPVELAS VIARRLNLTG ALGTVSEVSA
EGTYTGHLVG GLLHGQAKAE AVQALAEREG LDLSRCWAYS DSINDLPMLS LVGHPVAINP
DPDLKTVARE REWPIKDFRT ARKAAKIGIP TAAGVGALAG GVAAGMALRR RAAGA
|
|---|
| |