More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0481 on replicon NC_007777
Organism: Frankia sp. CcI3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0481  HAD family hydrolase  100 
 
 
295 aa  589  1e-167  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6135  HAD family hydrolase  85.71 
 
 
294 aa  450  1e-125  Frankia sp. EAN1pec  Bacteria  normal  normal  0.415462 
 
 
-
 
NC_013093  Amir_6738  HAD-superfamily subfamily IB hydrolase, TIGR01490  66.28 
 
 
294 aa  352  2.9999999999999997e-96  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4585  HAD-superfamily subfamily IB hydrolase, TIGR01490  68.36 
 
 
306 aa  340  2e-92  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.601592  n/a   
 
 
-
 
NC_013159  Svir_02790  HAD-superfamily subfamily IB hydrolase, TIGR01490  67.21 
 
 
323 aa  331  8e-90  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0542  Phosphoserine phosphatase-like protein  70.09 
 
 
289 aa  323  2e-87  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.260991 
 
 
-
 
NC_013235  Namu_0916  HAD-superfamily subfamily IB hydrolase, TIGR01490  67.74 
 
 
297 aa  318  7.999999999999999e-86  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2722  HAD family hydrolase  59.11 
 
 
305 aa  308  8e-83  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4446  HAD-superfamily subfamily IB hydrolase, TIGR01490  68.28 
 
 
290 aa  306  2.0000000000000002e-82  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0255  HAD-superfamily hydrolase  61.51 
 
 
286 aa  303  2.0000000000000002e-81  Thermobispora bispora DSM 43833  Bacteria  normal  0.185675  normal 
 
 
-
 
NC_014158  Tpau_0665  HAD-superfamily subfamily IB hydrolase, TIGR01490  60.69 
 
 
295 aa  301  6.000000000000001e-81  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.406953  n/a   
 
 
-
 
NC_013441  Gbro_1010  HAD-superfamily subfamily IB hydrolase, TIGR01490  59.85 
 
 
352 aa  299  3e-80  Gordonia bronchialis DSM 43247  Bacteria  normal  0.784708  n/a   
 
 
-
 
NC_008699  Noca_0490  HAD family hydrolase  61.09 
 
 
297 aa  298  8e-80  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0843  HAD family hydrolase  62.88 
 
 
301 aa  292  5e-78  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163877  normal  0.772835 
 
 
-
 
NC_009338  Mflv_0069  HAD family hydrolase  60.43 
 
 
295 aa  289  4e-77  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0248353  normal 
 
 
-
 
NC_009565  TBFG_10516  phosphoserine phosphatase serB1  60.34 
 
 
373 aa  289  4e-77  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0418  HAD family hydrolase  59.76 
 
 
312 aa  288  7e-77  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00884178 
 
 
-
 
NC_013947  Snas_6219  HAD-superfamily subfamily IB hydrolase TIGR01490  61.37 
 
 
289 aa  283  3.0000000000000004e-75  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0348  HAD family hydrolase  59.04 
 
 
290 aa  282  5.000000000000001e-75  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0674  HAD family hydrolase  60.7 
 
 
300 aa  282  6.000000000000001e-75  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0667  HAD family hydrolase  60.7 
 
 
300 aa  282  6.000000000000001e-75  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_0687  HAD family hydrolase  60.7 
 
 
300 aa  282  6.000000000000001e-75  Mycobacterium sp. KMS  Bacteria  normal  normal  0.164292 
 
 
-
 
NC_014210  Ndas_4355  HAD-superfamily subfamily IB hydrolase, TIGR01490  62.83 
 
 
262 aa  280  1e-74  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.571582 
 
 
-
 
NC_008541  Arth_3299  HAD family hydrolase  53.33 
 
 
272 aa  264  1e-69  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3098  HAD-superfamily subfamily IB hydrolase, TIGR01490  53.73 
 
 
272 aa  261  6.999999999999999e-69  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014151  Cfla_2740  HAD-superfamily subfamily IB hydrolase, TIGR01490  51.99 
 
 
288 aa  244  1.9999999999999999e-63  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0297875 
 
 
-
 
NC_009664  Krad_0614  HAD-superfamily subfamily IB hydrolase, TIGR01490  57.14 
 
 
255 aa  241  7.999999999999999e-63  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.160629  normal  0.0475682 
 
 
-
 
NC_013521  Sked_07130  HAD-superfamily subfamily IB hydrolase, TIGR01490  50 
 
 
311 aa  237  2e-61  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.371793 
 
 
-
 
NC_013530  Xcel_0438  HAD-superfamily subfamily IB hydrolase, TIGR01490  49.79 
 
 
268 aa  228  8e-59  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3259  HAD-superfamily subfamily IB hydrolase, TIGR01490  50.21 
 
 
263 aa  226  5.0000000000000005e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.107889  normal  0.303521 
 
 
-
 
NC_013131  Caci_8329  HAD-superfamily subfamily IB hydrolase, TIGR01490  48.92 
 
 
266 aa  219  3.9999999999999997e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.119426  normal 
 
 
-
 
NC_013739  Cwoe_4644  HAD-superfamily subfamily IB hydrolase, TIGR01490  42.36 
 
 
286 aa  157  3e-37  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.460145 
 
 
-
 
NC_013124  Afer_1925  HAD-superfamily subfamily IB hydrolase, TIGR01490  37.04 
 
 
273 aa  137  3.0000000000000003e-31  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0274  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.36 
 
 
270 aa  130  2.0000000000000002e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5423  HAD family hydrolase  34.4 
 
 
313 aa  125  1e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.988036 
 
 
-
 
NC_009338  Mflv_1382  HAD family hydrolase  33.94 
 
 
307 aa  124  1e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0503045  normal  0.084913 
 
 
-
 
NC_013159  Svir_35940  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.59 
 
 
280 aa  123  5e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.330222  normal  0.156171 
 
 
-
 
NC_013131  Caci_0054  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.78 
 
 
281 aa  122  6e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0590  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.85 
 
 
280 aa  120  1.9999999999999998e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.841556  n/a   
 
 
-
 
NC_008146  Mmcs_4807  HAD family hydrolase  32.61 
 
 
285 aa  120  1.9999999999999998e-26  Mycobacterium sp. MCS  Bacteria  normal  0.0376166  n/a   
 
 
-
 
NC_008705  Mkms_4893  HAD family hydrolase  32.61 
 
 
285 aa  120  1.9999999999999998e-26  Mycobacterium sp. KMS  Bacteria  normal  normal  0.271167 
 
 
-
 
NC_009077  Mjls_5194  HAD family hydrolase  32.61 
 
 
285 aa  120  3e-26  Mycobacterium sp. JLS  Bacteria  normal  0.421915  hitchhiker  0.000238579 
 
 
-
 
NC_009565  TBFG_13691  hypothetical protein  33.94 
 
 
287 aa  119  7e-26  Mycobacterium tuberculosis F11  Bacteria  normal  0.148419  normal  0.360878 
 
 
-
 
NC_009380  Strop_4041  HAD family hydrolase  33.64 
 
 
267 aa  119  7.999999999999999e-26  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal 
 
 
-
 
NC_009953  Sare_4432  HAD family hydrolase  33.18 
 
 
270 aa  116  3.9999999999999997e-25  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000343409 
 
 
-
 
NC_013947  Snas_6363  HAD-superfamily subfamily IB hydrolase TIGR01490  35.14 
 
 
272 aa  115  6.9999999999999995e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.499829  normal 
 
 
-
 
NC_014158  Tpau_3910  HAD-superfamily subfamily IB hydrolase  31.42 
 
 
284 aa  115  7.999999999999999e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0362  HAD family hydrolase  33.64 
 
 
289 aa  112  6e-24  Nocardioides sp. JS614  Bacteria  hitchhiker  0.00108694  n/a   
 
 
-
 
NC_008048  Sala_0193  HAD family hydrolase  32.02 
 
 
518 aa  110  2.0000000000000002e-23  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0459706  normal 
 
 
-
 
NC_013521  Sked_33380  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.83 
 
 
265 aa  110  3e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.156612  normal 
 
 
-
 
NC_013441  Gbro_4653  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.09 
 
 
493 aa  109  5e-23  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0756  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.76 
 
 
230 aa  108  1e-22  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.168454  n/a   
 
 
-
 
NC_011206  Lferr_0902  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.76 
 
 
230 aa  108  1e-22  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.101359  normal 
 
 
-
 
NC_014151  Cfla_2800  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.72 
 
 
275 aa  107  2e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00283353 
 
 
-
 
NC_009656  PSPA7_1870  hypothetical protein  32.6 
 
 
216 aa  105  1e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  0.531495  n/a   
 
 
-
 
NC_013441  Gbro_0515  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.03 
 
 
289 aa  102  8e-21  Gordonia bronchialis DSM 43247  Bacteria  normal  0.589704  n/a   
 
 
-
 
NC_008705  Mkms_3692  1-acyl-sn-glycerol-3-phosphate acyltransferase  28.42 
 
 
561 aa  102  9e-21  Mycobacterium sp. KMS  Bacteria  decreased coverage  0.000184882  normal 
 
 
-
 
NC_002977  MCA2087  HAD family hydrolase  32 
 
 
220 aa  102  9e-21  Methylococcus capsulatus str. Bath  Bacteria  hitchhiker  0.00266008  n/a   
 
 
-
 
NC_008146  Mmcs_3619  1-acyl-sn-glycerol-3-phosphate acyltransferase  28.42 
 
 
561 aa  102  9e-21  Mycobacterium sp. MCS  Bacteria  hitchhiker  0.00474083  n/a   
 
 
-
 
NC_009077  Mjls_3624  1-acyl-sn-glycerol-3-phosphate acyltransferase  28.42 
 
 
561 aa  102  1e-20  Mycobacterium sp. JLS  Bacteria  normal  0.329409  normal 
 
 
-
 
NC_013530  Xcel_0320  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.91 
 
 
258 aa  99.8  5e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.369561  n/a   
 
 
-
 
NC_008576  Mmc1_2929  HAD family hydrolase  29.46 
 
 
221 aa  97.8  2e-19  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.0000000550566  normal 
 
 
-
 
NC_009675  Anae109_1214  HAD family hydrolase  31.84 
 
 
225 aa  97.1  3e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0597827  normal 
 
 
-
 
NC_013174  Jden_2226  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.3 
 
 
282 aa  96.3  6e-19  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.98055 
 
 
-
 
NC_008463  PA14_49620  phosphoserine phosphatase  32.73 
 
 
217 aa  96.3  6e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00503624  normal 
 
 
-
 
NC_010501  PputW619_0318  HAD family hydrolase  29.82 
 
 
218 aa  95.5  1e-18  Pseudomonas putida W619  Bacteria  normal  normal  0.13474 
 
 
-
 
NC_013235  Namu_5002  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.3 
 
 
488 aa  94  2e-18  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0520  HAD family hydrolase  31.86 
 
 
220 aa  94.7  2e-18  Methylobacillus flagellatus KT  Bacteria  normal  0.0927887  normal 
 
 
-
 
NC_009675  Anae109_2447  HAD family hydrolase  27.95 
 
 
241 aa  94  3e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.23096  normal 
 
 
-
 
NC_008789  Hhal_0886  HAD family hydrolase  31.08 
 
 
227 aa  93.2  4e-18  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4234  hypothetical protein  31.82 
 
 
217 aa  92  9e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5147  HAD superfamily hydrolase  28.9 
 
 
218 aa  91.7  1e-17  Pseudomonas putida KT2440  Bacteria  normal  normal  0.416091 
 
 
-
 
NC_009921  Franean1_4170  HAD family hydrolase  45 
 
 
787 aa  91.7  1e-17  Frankia sp. EAN1pec  Bacteria  normal  0.243579  normal  0.356217 
 
 
-
 
NC_010322  PputGB1_5200  HAD family hydrolase  28.9 
 
 
218 aa  92  1e-17  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_21900  HAD-superfamily hydrolase  40.77 
 
 
192 aa  92  1e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00000205565 
 
 
-
 
NC_008825  Mpe_A2629  putative hydrolase protein  30.28 
 
 
220 aa  91.3  2e-17  Methylibium petroleiphilum PM1  Bacteria  normal  0.283045  normal 
 
 
-
 
NC_009512  Pput_5054  HAD family hydrolase  28.44 
 
 
218 aa  90.9  2e-17  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0395  HAD-superfamily subfamily IB hydrolase, TIGR01490  29.78 
 
 
228 aa  90.5  3e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.771269  normal  0.534217 
 
 
-
 
NC_009338  Mflv_2564  HAD family hydrolase  25.39 
 
 
570 aa  90.5  3e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.341145  normal  0.242767 
 
 
-
 
NC_008726  Mvan_4075  HAD family hydrolase  26.45 
 
 
525 aa  89.7  5e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.588653 
 
 
-
 
NC_007760  Adeh_1167  HAD family hydrolase  29.07 
 
 
225 aa  89.7  6e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0428  hypothetical protein  30.22 
 
 
217 aa  89.4  6e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.469146  n/a   
 
 
-
 
NC_009338  Mflv_3285  HAD family hydrolase  31.41 
 
 
249 aa  89.4  6e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.651915 
 
 
-
 
NC_013440  Hoch_3628  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.18 
 
 
232 aa  89.4  6e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.856585  hitchhiker  0.00143877 
 
 
-
 
NC_013440  Hoch_6034  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.57 
 
 
222 aa  88.6  1e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_04380  hypothetical protein  29.78 
 
 
217 aa  88.2  1e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5379  HAD family hydrolase  29.33 
 
 
218 aa  87.8  2e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.396939  normal  0.0228377 
 
 
-
 
NC_012560  Avin_48250  HAD-superfamily hydrolase subfamily IB, PSPase-like protein  29.78 
 
 
217 aa  87  3e-16  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4219  HAD family hydrolase  28.31 
 
 
217 aa  87  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3161  HAD family hydrolase  28 
 
 
252 aa  87  3e-16  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1328  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.19 
 
 
225 aa  86.7  4e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1226  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.19 
 
 
225 aa  86.7  4e-16  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12504  bifunctionnal transmembrane phospholipid biosynthesis enzyme plsC: L-3-phosphoserine phosphatase + 1-acyl-sn-glycerol-3-phosphate acyltransferase  28.21 
 
 
580 aa  86.3  6e-16  Mycobacterium tuberculosis F11  Bacteria  normal  0.088131  normal 
 
 
-
 
NC_007005  Psyr_1601  HAD family hydrolase  29.03 
 
 
217 aa  85.1  0.000000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0403422 
 
 
-
 
NC_007404  Tbd_2011  phosphoserine phosphatase  30.32 
 
 
222 aa  85.1  0.000000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.291449  normal 
 
 
-
 
NC_007951  Bxe_A4206  HAD family hydrolase  35.4 
 
 
227 aa  85.5  0.000000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2416  HAD-superfamily subfamily IB hydrolase, TIGR01490  29.78 
 
 
219 aa  85.1  0.000000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0510  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.8 
 
 
227 aa  84.7  0.000000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.052389 
 
 
-
 
NC_008340  Mlg_0426  HAD family hydrolase  29.73 
 
 
231 aa  83.6  0.000000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0139155 
 
 
-
 
NC_009379  Pnuc_1764  HAD family hydrolase  28.25 
 
 
226 aa  83.6  0.000000000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>