| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1764 |
|---|
| Symbol | |
|---|
| ID | 5051921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1833901 |
|---|
| End bp | 1834581 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471937 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001156541 |
|---|
| Protein GI | 145589944 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAGT TAGCTCTTTT CGATTTAGAC CATACTCTTC TACCCTGCGA TAGTGATTAC
GAGTGGGGCC AATTTTTGGC TCGCATCGGT GTCGTCGATA GCGAATACTA TGCTCGTCAA
AACGAACGTT TTTATCAGGA CTACAAAGAA GGTAAGCTCG ATATTCATGA ATTTTTACGT
TTTGCTTTAA AGCCTCTCTC AGAGCATTCT CGAGAACAAC TCAAAGAATG GCATGACGCA
TTTATGGATG AAGTAATCAA TGGTCAATTG CGTGAACAAG CGCTAGATTT AGTAAAGCGC
CACCAAGATG CAGGTGACTT ATGTTGCGTC ATCACAGCAA CTAATAGCTT TGTCACGCGC
CCCATCGTAG AAAGCTTTGG CATTGAACAC CTCATTGCGA CCGAGCCTGC CACCCAAGAA
AATAATCCCT TAGCCAATTA CACCGGCGAA GTTCAGGGCA TCCCCAATTT TCGCGAAGGC
AAGATTCAGA ACCTTCAGGC TTGGCTAGCC AAGCAAAAAT TAAATCTAGA TACCTTACCG
CGCAGTTATT TTTATTCCGA CTCTATGAAT GACTTGCCGC TGCTTGAGCA AGTAAGCCAT
CCAGTCGCCA CCAATCCAGA TGACCGGCTT CGCAATGAAG CGCGCCTACG CAACTGGCCT
ATTCTCGAGC TATTTGCATG A
|
|---|
| Protein sequence | MTQLALFDLD HTLLPCDSDY EWGQFLARIG VVDSEYYARQ NERFYQDYKE GKLDIHEFLR
FALKPLSEHS REQLKEWHDA FMDEVINGQL REQALDLVKR HQDAGDLCCV ITATNSFVTR
PIVESFGIEH LIATEPATQE NNPLANYTGE VQGIPNFREG KIQNLQAWLA KQKLNLDTLP
RSYFYSDSMN DLPLLEQVSH PVATNPDDRL RNEARLRNWP ILELFA
|
|---|
| |