More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_1478 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1478  carbamoyl-phosphate synthase small subunit  100 
 
 
369 aa  741    Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.515532  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  55.28 
 
 
369 aa  395  1e-109  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  53.31 
 
 
369 aa  386  1e-106  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  52.45 
 
 
369 aa  387  1e-106  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  51.5 
 
 
371 aa  383  1e-105  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  52.89 
 
 
366 aa  377  1e-103  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  52.23 
 
 
367 aa  375  1e-103  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  52.37 
 
 
391 aa  377  1e-103  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  51.24 
 
 
367 aa  366  1e-100  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  50 
 
 
374 aa  362  8e-99  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  52.21 
 
 
359 aa  361  1e-98  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  52.45 
 
 
374 aa  360  2e-98  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  49.06 
 
 
376 aa  359  5e-98  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  48.66 
 
 
374 aa  357  1.9999999999999998e-97  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  49.33 
 
 
373 aa  357  1.9999999999999998e-97  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  50.67 
 
 
373 aa  354  1e-96  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  51.47 
 
 
373 aa  354  2e-96  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  51.6 
 
 
380 aa  350  2e-95  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  49.58 
 
 
358 aa  350  3e-95  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  47.99 
 
 
374 aa  348  6e-95  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  51.53 
 
 
361 aa  348  6e-95  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  48.38 
 
 
373 aa  346  4e-94  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  47.45 
 
 
374 aa  345  6e-94  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  49.58 
 
 
359 aa  345  6e-94  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  49.6 
 
 
379 aa  345  8e-94  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  50.26 
 
 
386 aa  344  1e-93  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  52.19 
 
 
373 aa  343  2.9999999999999997e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  48.51 
 
 
372 aa  342  5e-93  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  48.81 
 
 
389 aa  342  7e-93  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  49.21 
 
 
383 aa  342  7e-93  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  51.91 
 
 
373 aa  341  1e-92  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  46.38 
 
 
377 aa  341  1e-92  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.53 
 
 
386 aa  340  2e-92  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_008751  Dvul_0268  carbamoyl phosphate synthase small subunit  50 
 
 
375 aa  337  1.9999999999999998e-91  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.583908 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  51.09 
 
 
373 aa  336  2.9999999999999997e-91  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  49.32 
 
 
369 aa  333  2e-90  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_011769  DvMF_2370  carbamoyl phosphate synthase small subunit  49.46 
 
 
376 aa  333  2e-90  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.82733 
 
 
-
 
NC_011899  Hore_02880  carbamoyl-phosphate synthase, small subunit  48.18 
 
 
364 aa  333  3e-90  Halothermothrix orenii H 168  Bacteria  normal  0.422195  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  49.07 
 
 
388 aa  332  6e-90  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  48.79 
 
 
376 aa  332  6e-90  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  49.19 
 
 
375 aa  332  9e-90  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0768  carbamoyl phosphate synthase small subunit  45.88 
 
 
366 aa  331  1e-89  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  47.85 
 
 
380 aa  331  1e-89  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.99 
 
 
391 aa  331  1e-89  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  47.84 
 
 
393 aa  331  1e-89  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  48.91 
 
 
372 aa  330  2e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  46.61 
 
 
387 aa  330  2e-89  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_004116  SAG1043  carbamoyl phosphate synthase small subunit  43.37 
 
 
358 aa  329  5.0000000000000004e-89  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  48.49 
 
 
379 aa  329  5.0000000000000004e-89  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2536  carbamoyl phosphate synthase small subunit  48.21 
 
 
373 aa  328  6e-89  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0261621  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  48.12 
 
 
381 aa  329  6e-89  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  47.24 
 
 
384 aa  328  7e-89  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  47.58 
 
 
380 aa  328  9e-89  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  46.11 
 
 
397 aa  328  9e-89  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  50.81 
 
 
377 aa  328  1.0000000000000001e-88  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_009487  SaurJH9_1261  carbamoyl phosphate synthase small subunit  44.81 
 
 
366 aa  328  1.0000000000000001e-88  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1286  carbamoyl phosphate synthase small subunit  44.81 
 
 
366 aa  328  1.0000000000000001e-88  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.510283  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  47.03 
 
 
385 aa  328  1.0000000000000001e-88  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  47.85 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  47.85 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  47.85 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  47.85 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  45.73 
 
 
356 aa  327  2.0000000000000001e-88  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  47.85 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  47.01 
 
 
377 aa  327  3e-88  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_009972  Haur_4242  carbamoyl-phosphate synthase, small subunit  48.79 
 
 
376 aa  327  3e-88  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  46.61 
 
 
381 aa  327  3e-88  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  46.4 
 
 
378 aa  326  4.0000000000000003e-88  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  47.31 
 
 
380 aa  326  4.0000000000000003e-88  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  47.31 
 
 
380 aa  326  4.0000000000000003e-88  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_011725  BCB4264_A3985  carbamoyl phosphate synthase small subunit  47.37 
 
 
365 aa  325  7e-88  Bacillus cereus B4264  Bacteria  normal  0.289727  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  48.77 
 
 
390 aa  325  7e-88  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_011883  Ddes_1097  carbamoyl phosphate synthase small subunit  48.93 
 
 
376 aa  325  8.000000000000001e-88  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.643284  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  49.73 
 
 
381 aa  325  9e-88  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_003909  BCE_3932  carbamoyl phosphate synthase small subunit  47.37 
 
 
365 aa  325  1e-87  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  47.03 
 
 
382 aa  324  1e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  47.58 
 
 
381 aa  324  1e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  47.58 
 
 
381 aa  324  1e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  50.39 
 
 
405 aa  324  1e-87  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_010571  Oter_1915  carbamoyl-phosphate synthase, small subunit  46.95 
 
 
390 aa  324  1e-87  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  47.58 
 
 
380 aa  324  1e-87  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_011658  BCAH187_A3936  carbamoyl phosphate synthase small subunit  47.37 
 
 
365 aa  325  1e-87  Bacillus cereus AH187  Bacteria  normal  0.0146429  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3714  carbamoyl phosphate synthase small subunit  47.37 
 
 
365 aa  323  2e-87  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.971369  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  50.55 
 
 
378 aa  324  2e-87  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_005945  BAS3738  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  323  2e-87  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3629  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  323  2e-87  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3901  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  323  2e-87  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000355158 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  49.32 
 
 
385 aa  324  2e-87  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_007530  GBAA_4026  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  323  2e-87  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0667428  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  45.45 
 
 
398 aa  323  2e-87  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  47.85 
 
 
390 aa  324  2e-87  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_011772  BCG9842_B1256  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  324  2e-87  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  48.48 
 
 
364 aa  323  2e-87  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  45.14 
 
 
376 aa  323  3e-87  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3646  carbamoyl phosphate synthase small subunit  47.09 
 
 
365 aa  323  3e-87  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_09091  carbamoyl phosphate synthase small subunit  44 
 
 
379 aa  323  3e-87  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.347132  n/a   
 
 
-
 
NC_013501  Rmar_2002  carbamoyl-phosphate synthase, small subunit  48.2 
 
 
379 aa  322  5e-87  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2913  carbamoyl-phosphate synthase, small subunit  44.57 
 
 
351 aa  322  5e-87  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1563  carbamoyl-phosphate synthase, small subunit  48.25 
 
 
377 aa  322  5e-87  Halothiobacillus neapolitanus c2  Bacteria  normal  0.878317  n/a   
 
 
-
 
NC_008532  STER_0558  carbamoyl phosphate synthase small subunit  43.17 
 
 
362 aa  322  5e-87  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
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