More than 300 homologs were found in PanDaTox collection
for query gene PsycPRwf_0335 on replicon NC_009524
Organism: Psychrobacter sp. PRwf-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009524  PsycPRwf_0335  formate dehydrogenase, subunit FdhD  100 
 
 
379 aa  781    Psychrobacter sp. PRwf-1  Bacteria  normal  0.727751  hitchhiker  0.00000000798764 
 
 
-
 
NC_007969  Pcryo_1603  formate dehydrogenase, subunit FdhD  57.7 
 
 
337 aa  368  1e-101  Psychrobacter cryohalolentis K5  Bacteria  normal  0.41587  normal  0.291375 
 
 
-
 
NC_007204  Psyc_1443  formate dehydrogenase accessory protein FdhD  53.95 
 
 
336 aa  362  7.0000000000000005e-99  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.727621 
 
 
-
 
NC_012791  Vapar_3020  formate dehydrogenase family accessory protein FdhD  33.43 
 
 
278 aa  138  2e-31  Variovorax paradoxus S110  Bacteria  normal  0.848082  n/a   
 
 
-
 
NC_003296  RSp1050  formate dehydrogenase associated protein  33.65 
 
 
273 aa  134  1.9999999999999998e-30  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2747  formate dehydrogenase family accessory protein FdhD  34.85 
 
 
292 aa  135  1.9999999999999998e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0059323 
 
 
-
 
NC_009654  Mmwyl1_3012  formate dehydrogenase family accessory protein FdhD  32.92 
 
 
290 aa  135  1.9999999999999998e-30  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.492307 
 
 
-
 
NC_007973  Rmet_1125  formate dehydrogenase family accessory protein FdhD  34.08 
 
 
290 aa  134  3e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.802085  normal 
 
 
-
 
NC_009901  Spea_0444  formate dehydrogenase accessory protein  31.53 
 
 
287 aa  133  3.9999999999999996e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0108  formate dehydrogenase accessory protein  31.95 
 
 
278 aa  133  3.9999999999999996e-30  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0103  formate dehydrogenase accessory protein  31.95 
 
 
278 aa  133  5e-30  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4025  formate dehydrogenase accessory protein FdhD  31.58 
 
 
283 aa  133  6e-30  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0108  formate dehydrogenase accessory protein  31.95 
 
 
278 aa  132  6.999999999999999e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4092  formate dehydrogenase, subunit FdhD  33.23 
 
 
290 aa  132  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.2892  n/a   
 
 
-
 
NC_013457  VEA_000093  formate dehydrogenase chain D  31.95 
 
 
276 aa  132  1.0000000000000001e-29  Vibrio sp. Ex25  Bacteria  normal  0.257578  n/a   
 
 
-
 
NC_008345  Sfri_0748  formate dehydrogenase family accessory protein FdhD  29.43 
 
 
271 aa  131  2.0000000000000002e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0106  formate dehydrogenase accessory protein  31.83 
 
 
278 aa  130  3e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0110  formate dehydrogenase accessory protein  31.83 
 
 
278 aa  130  3e-29  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0257  formate dehydrogenase family accessory protein FdhD  32 
 
 
276 aa  130  4.0000000000000003e-29  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0174674 
 
 
-
 
NC_009997  Sbal195_0111  formate dehydrogenase accessory protein  31.83 
 
 
278 aa  130  4.0000000000000003e-29  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0272  formate dehydrogenase family accessory protein FdhD  31.67 
 
 
276 aa  129  8.000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4953  formate dehydrogenase family accessory protein FdhD  32 
 
 
276 aa  129  9.000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  0.211752  hitchhiker  0.000061887 
 
 
-
 
NC_004347  SO_0107  formate dehydrogenase accessory protein  30.99 
 
 
278 aa  127  4.0000000000000003e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_002977  MCA1390  formate dehydrogenase accessory protein FdhD  32.59 
 
 
306 aa  126  5e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  0.780868  n/a   
 
 
-
 
NC_007947  Mfla_0719  formate dehydrogenase family accessory protein FdhD  34.29 
 
 
278 aa  126  7e-28  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0699  formate dehydrogenase accessory protein FdhD  30.67 
 
 
274 aa  125  1e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0200  formate dehydrogenase family accessory protein FdhD  34.19 
 
 
272 aa  125  2e-27  Thauera sp. MZ1T  Bacteria  normal  0.754057  n/a   
 
 
-
 
NC_008836  BMA10229_A2334  formate dehydrogenase accessory protein  30.67 
 
 
274 aa  124  2e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  0.390052  n/a   
 
 
-
 
NC_006348  BMA0201  formate dehydrogenase accessory protein  30.67 
 
 
274 aa  124  2e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0863  formate dehydrogenase family accessory protein FdhD  30.67 
 
 
274 aa  124  2e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0684  formate dehydrogenase accessory protein FdhD  30.67 
 
 
274 aa  124  2e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0665  formate dehydrogenase family accessory protein FdhD  32.81 
 
 
279 aa  125  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.223999  normal 
 
 
-
 
NC_009080  BMA10247_2414  formate dehydrogenase accessory protein  30.67 
 
 
274 aa  124  2e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2744  formate dehydrogenase accessory protein  30.67 
 
 
274 aa  124  2e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0280  formate dehydrogenase, subunit FdhD  29.87 
 
 
279 aa  124  3e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.345753  normal  0.175178 
 
 
-
 
NC_012560  Avin_03800  formate dehydrogenase family accessory protein FdhD  32.37 
 
 
275 aa  124  3e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1873  formate dehydrogenase family accessory protein FdhD  28.71 
 
 
286 aa  124  3e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2744  formate dehydrogenase family accessory protein FdhD  30.89 
 
 
284 aa  124  4e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.135991  normal 
 
 
-
 
NC_007802  Jann_2557  formate dehydrogenase accessory protein  32.91 
 
 
269 aa  124  4e-27  Jannaschia sp. CCS1  Bacteria  normal  0.266553  normal 
 
 
-
 
NC_008060  Bcen_2105  formate dehydrogenase family accessory protein FdhD  30.89 
 
 
284 aa  124  4e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.719105  n/a   
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  31.86 
 
 
277 aa  124  4e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_2717  formate dehydrogenase family accessory protein FdhD  30.89 
 
 
284 aa  124  4e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.546813  n/a   
 
 
-
 
NC_010322  PputGB1_0282  formate dehydrogenase family accessory protein FdhD  31 
 
 
276 aa  123  5e-27  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0034  formate dehydrogenase family accessory protein FdhD  32.17 
 
 
280 aa  122  7e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.663186 
 
 
-
 
NC_007925  RPC_4644  formate dehydrogenase accessory protein  30.26 
 
 
272 aa  123  7e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0389  formate dehydrogenase family accessory protein FdhD  30.7 
 
 
273 aa  122  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.318407 
 
 
-
 
NC_009708  YpsIP31758_4120  formate dehydrogenase accessory protein  33.01 
 
 
274 aa  122  9.999999999999999e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2742  formate dehydrogenase accessory protein  33.54 
 
 
271 aa  121  1.9999999999999998e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.455642 
 
 
-
 
NC_007493  RSP_1081  formate dehydrogenase accessory protein  33.54 
 
 
271 aa  121  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0582  formate dehydrogenase family accessory protein FdhD  30.91 
 
 
274 aa  121  1.9999999999999998e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3771  formate dehydrogenase accessory protein  32.69 
 
 
274 aa  121  1.9999999999999998e-26  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2769  formate dehydrogenase family accessory protein FdhD  30.28 
 
 
274 aa  121  1.9999999999999998e-26  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0057  formate dehydrogenase accessory protein  33.33 
 
 
272 aa  120  3e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6044  formate dehydrogenase, subunit FdhD  31.19 
 
 
278 aa  120  3e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0036  formate dehydrogenase accessory protein  32.69 
 
 
274 aa  120  3e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2635  formate dehydrogenase family accessory protein FdhD  29.97 
 
 
274 aa  120  3e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.481847 
 
 
-
 
NC_007005  Psyr_4945  formate dehydrogenase, subunit FdhD  32 
 
 
278 aa  120  3.9999999999999996e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4388  formate dehydrogenase family accessory protein FdhD  32.03 
 
 
271 aa  119  6e-26  Ralstonia pickettii 12D  Bacteria  normal  0.915911  normal  0.955368 
 
 
-
 
NC_010678  Rpic_4278  formate dehydrogenase family accessory protein FdhD  32.03 
 
 
271 aa  119  6e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3819  formate dehydrogenase accessory protein  30.74 
 
 
269 aa  119  7e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.934196  n/a   
 
 
-
 
NC_007951  Bxe_A4034  formate dehydrogenase, subunit FdhD  31.29 
 
 
279 aa  119  7e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.276271 
 
 
-
 
NC_009485  BBta_3088  formate dehydrogenase accessory protein  31.07 
 
 
278 aa  119  9e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0569  formate dehydrogenase family accessory protein FdhD  29.34 
 
 
274 aa  119  9.999999999999999e-26  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0622  formate dehydrogenase accessory protein  31.73 
 
 
275 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1517  formate dehydrogenase family accessory protein FdhD  30.75 
 
 
310 aa  118  1.9999999999999998e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0766825 
 
 
-
 
NC_009428  Rsph17025_2852  formate dehydrogenase accessory protein  31.38 
 
 
271 aa  117  1.9999999999999998e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.743331  normal  0.675793 
 
 
-
 
NC_011083  SeHA_C4365  formate dehydrogenase accessory protein  32.51 
 
 
278 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_68430  putative formate dehydrogenase accessory protein FdhD  33 
 
 
279 aa  117  3e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.270823  normal  0.596134 
 
 
-
 
NC_011080  SNSL254_A4319  formate dehydrogenase accessory protein  32.61 
 
 
278 aa  117  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.25899  normal  0.917498 
 
 
-
 
NC_010717  PXO_00469  formate dehydrogenase accessory protein  31.95 
 
 
273 aa  117  3.9999999999999997e-25  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_011205  SeD_A4430  formate dehydrogenase accessory protein  32.61 
 
 
278 aa  116  5e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.141571  normal 
 
 
-
 
NC_011094  SeSA_A4252  formate dehydrogenase accessory protein  32.61 
 
 
278 aa  116  5e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.720037 
 
 
-
 
NC_011149  SeAg_B4274  formate dehydrogenase accessory protein  32.61 
 
 
278 aa  116  5e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4089  formate dehydrogenase family accessory protein FdhD  32.29 
 
 
277 aa  116  6e-25  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5346  formate dehydrogenase accessory protein  32.29 
 
 
277 aa  116  6e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_4122  formate dehydrogenase accessory protein  32.29 
 
 
277 aa  116  6e-25  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0073  formate dehydrogenase accessory protein  32.05 
 
 
277 aa  116  6.9999999999999995e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4123  formate dehydrogenase accessory protein  32.29 
 
 
266 aa  116  7.999999999999999e-25  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4374  formate dehydrogenase accessory protein  32.29 
 
 
266 aa  116  7.999999999999999e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4425  formate dehydrogenase accessory protein  32.29 
 
 
266 aa  116  7.999999999999999e-25  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0806  formate dehydrogenase accessory protein  32.05 
 
 
276 aa  116  7.999999999999999e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4282  formate dehydrogenase accessory protein  31.86 
 
 
267 aa  115  8.999999999999998e-25  Escherichia coli SMS-3-5  Bacteria  normal  0.715148  normal 
 
 
-
 
CP001509  ECD_03780  formate dehydrogenase accessory protein  32.29 
 
 
277 aa  115  1.0000000000000001e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5920  formate dehydrogenase family accessory protein FdhD  32.34 
 
 
279 aa  115  1.0000000000000001e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4096  formate dehydrogenase family accessory protein FdhD  30.74 
 
 
274 aa  115  1.0000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03729  hypothetical protein  32.29 
 
 
277 aa  115  1.0000000000000001e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5406  formate dehydrogenase accessory protein FdhD  30.67 
 
 
278 aa  113  4.0000000000000004e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0723  formate dehydrogenase accessory protein  30.42 
 
 
277 aa  114  4.0000000000000004e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3478  formate dehydrogenase family accessory protein FdhD  30.1 
 
 
292 aa  114  4.0000000000000004e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  0.739751  normal  0.474196 
 
 
-
 
NC_012917  PC1_4159  formate dehydrogenase accessory protein  30.99 
 
 
277 aa  113  6e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3635  formate dehydrogenase accessory protein  30.42 
 
 
274 aa  113  6e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222739 
 
 
-
 
NC_012850  Rleg_3924  formate dehydrogenase accessory protein  29.45 
 
 
274 aa  113  7.000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.789424  normal 
 
 
-
 
NC_009436  Ent638_4083  formate dehydrogenase accessory protein  31.95 
 
 
278 aa  112  9e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0391  formate dehydrogenase family accessory protein FdhD  31.79 
 
 
274 aa  112  9e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0620  formate dehydrogenase accessory protein  32.18 
 
 
288 aa  112  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.979772  n/a   
 
 
-
 
NC_013421  Pecwa_4441  formate dehydrogenase accessory protein  30.13 
 
 
277 aa  111  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0082  formate dehydrogenase accessory protein  32.59 
 
 
278 aa  111  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2855  formate dehydrogenase family accessory protein FdhD  30.29 
 
 
273 aa  111  2.0000000000000002e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1654  formate dehydrogenase family accessory protein FdhD  27.6 
 
 
282 aa  111  3e-23  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1352  formate dehydrogenase family accessory protein FdhD  27.6 
 
 
282 aa  111  3e-23  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
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