More than 300 homologs were found in PanDaTox collection
for query gene Psyr_4945 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_4945  formate dehydrogenase, subunit FdhD  100 
 
 
278 aa  564  1e-160  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5406  formate dehydrogenase accessory protein FdhD  92.09 
 
 
278 aa  521  1e-147  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0280  formate dehydrogenase, subunit FdhD  81.34 
 
 
279 aa  448  1e-125  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.345753  normal  0.175178 
 
 
-
 
NC_002947  PP_0257  formate dehydrogenase family accessory protein FdhD  75.09 
 
 
276 aa  411  1e-114  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0174674 
 
 
-
 
NC_009512  Pput_0272  formate dehydrogenase family accessory protein FdhD  75.46 
 
 
276 aa  412  1e-114  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4953  formate dehydrogenase family accessory protein FdhD  74.35 
 
 
276 aa  409  1e-113  Pseudomonas putida W619  Bacteria  normal  0.211752  hitchhiker  0.000061887 
 
 
-
 
NC_010322  PputGB1_0282  formate dehydrogenase family accessory protein FdhD  75.09 
 
 
276 aa  409  1e-113  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0391  formate dehydrogenase family accessory protein FdhD  63.74 
 
 
274 aa  327  2.0000000000000001e-88  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5920  formate dehydrogenase family accessory protein FdhD  63.74 
 
 
279 aa  325  5e-88  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68430  putative formate dehydrogenase accessory protein FdhD  63.89 
 
 
279 aa  319  3e-86  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.270823  normal  0.596134 
 
 
-
 
NC_012560  Avin_03800  formate dehydrogenase family accessory protein FdhD  59.46 
 
 
275 aa  310  2e-83  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000093  formate dehydrogenase chain D  56.76 
 
 
276 aa  288  1e-76  Vibrio sp. Ex25  Bacteria  normal  0.257578  n/a   
 
 
-
 
NC_007492  Pfl01_2148  formate dehydrogenase, subunit FdhD  56.32 
 
 
280 aa  286  2.9999999999999996e-76  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0748  formate dehydrogenase family accessory protein FdhD  47.06 
 
 
271 aa  219  3.9999999999999997e-56  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1873  formate dehydrogenase family accessory protein FdhD  42.75 
 
 
286 aa  215  7e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3012  formate dehydrogenase family accessory protein FdhD  43.8 
 
 
290 aa  201  9.999999999999999e-51  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.492307 
 
 
-
 
NC_007347  Reut_A0620  formate dehydrogenase accessory protein  42.15 
 
 
288 aa  191  2e-47  Ralstonia eutropha JMP134  Bacteria  normal  0.979772  n/a   
 
 
-
 
NC_007947  Mfla_0719  formate dehydrogenase family accessory protein FdhD  40.75 
 
 
278 aa  189  4e-47  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2059  formate dehydrogenase accessory protein FdhD  42.42 
 
 
277 aa  189  5e-47  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4025  formate dehydrogenase accessory protein FdhD  37.55 
 
 
283 aa  183  3e-45  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_4120  formate dehydrogenase accessory protein  40 
 
 
274 aa  179  4.999999999999999e-44  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3771  formate dehydrogenase accessory protein  39.58 
 
 
274 aa  178  7e-44  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0036  formate dehydrogenase accessory protein  39.58 
 
 
274 aa  177  1e-43  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0200  formate dehydrogenase family accessory protein FdhD  38.66 
 
 
272 aa  178  1e-43  Thauera sp. MZ1T  Bacteria  normal  0.754057  n/a   
 
 
-
 
CP001637  EcDH1_4089  formate dehydrogenase family accessory protein FdhD  39.41 
 
 
277 aa  177  2e-43  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4123  formate dehydrogenase accessory protein  39.41 
 
 
266 aa  177  2e-43  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4425  formate dehydrogenase accessory protein  39.41 
 
 
266 aa  177  2e-43  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4282  formate dehydrogenase accessory protein  39.41 
 
 
267 aa  177  2e-43  Escherichia coli SMS-3-5  Bacteria  normal  0.715148  normal 
 
 
-
 
NC_010468  EcolC_4122  formate dehydrogenase accessory protein  39.41 
 
 
277 aa  177  2e-43  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5346  formate dehydrogenase accessory protein  39.41 
 
 
277 aa  177  2e-43  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4374  formate dehydrogenase accessory protein  39.41 
 
 
266 aa  177  2e-43  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03780  formate dehydrogenase accessory protein  39.41 
 
 
277 aa  176  3e-43  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03729  hypothetical protein  39.41 
 
 
277 aa  176  3e-43  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1125  formate dehydrogenase family accessory protein FdhD  41.63 
 
 
290 aa  175  6e-43  Cupriavidus metallidurans CH34  Bacteria  normal  0.802085  normal 
 
 
-
 
NC_009832  Spro_0082  formate dehydrogenase accessory protein  37.35 
 
 
278 aa  175  9e-43  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3020  formate dehydrogenase family accessory protein FdhD  42.22 
 
 
278 aa  173  2.9999999999999996e-42  Variovorax paradoxus S110  Bacteria  normal  0.848082  n/a   
 
 
-
 
NC_007973  Rmet_0556  formate dehydrogenase accessory protein  41.67 
 
 
281 aa  173  3.9999999999999995e-42  Cupriavidus metallidurans CH34  Bacteria  normal  0.152789  normal  0.415785 
 
 
-
 
NC_012912  Dd1591_0057  formate dehydrogenase accessory protein  39.92 
 
 
272 aa  172  5.999999999999999e-42  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4319  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  171  1e-41  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.25899  normal  0.917498 
 
 
-
 
NC_011083  SeHA_C4365  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  171  1e-41  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0073  formate dehydrogenase accessory protein  40.25 
 
 
277 aa  171  1e-41  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4430  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  171  2e-41  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.141571  normal 
 
 
-
 
NC_011094  SeSA_A4252  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  171  2e-41  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.720037 
 
 
-
 
NC_011149  SeAg_B4274  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  171  2e-41  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0108  formate dehydrogenase accessory protein  39 
 
 
278 aa  170  3e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0103  formate dehydrogenase accessory protein  39 
 
 
278 aa  169  6e-41  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0108  formate dehydrogenase accessory protein  39.83 
 
 
278 aa  168  7e-41  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_4083  formate dehydrogenase accessory protein  38.89 
 
 
278 aa  168  8e-41  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  38.89 
 
 
277 aa  168  9e-41  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4092  formate dehydrogenase, subunit FdhD  38.31 
 
 
290 aa  168  9e-41  Ralstonia eutropha JMP134  Bacteria  normal  0.2892  n/a   
 
 
-
 
NC_009665  Shew185_0106  formate dehydrogenase accessory protein  39.83 
 
 
278 aa  167  1e-40  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0111  formate dehydrogenase accessory protein  39.83 
 
 
278 aa  167  1e-40  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0110  formate dehydrogenase accessory protein  39.83 
 
 
278 aa  167  1e-40  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4159  formate dehydrogenase accessory protein  39.32 
 
 
277 aa  167  2e-40  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4441  formate dehydrogenase accessory protein  38.89 
 
 
277 aa  165  5.9999999999999996e-40  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2747  formate dehydrogenase family accessory protein FdhD  37.86 
 
 
292 aa  163  2.0000000000000002e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0059323 
 
 
-
 
NC_008347  Mmar10_2685  formate dehydrogenase family accessory protein FdhD  39.66 
 
 
269 aa  163  3e-39  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0699  formate dehydrogenase accessory protein FdhD  37.25 
 
 
274 aa  162  4.0000000000000004e-39  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0684  formate dehydrogenase accessory protein FdhD  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0201  formate dehydrogenase accessory protein  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0863  formate dehydrogenase family accessory protein FdhD  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2744  formate dehydrogenase accessory protein  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2334  formate dehydrogenase accessory protein  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia mallei NCTC 10229  Bacteria  normal  0.390052  n/a   
 
 
-
 
NC_009080  BMA10247_2414  formate dehydrogenase accessory protein  37.65 
 
 
274 aa  162  8.000000000000001e-39  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1858  formate dehydrogenase family accessory protein FdhD  37.61 
 
 
285 aa  161  9e-39  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp1050  formate dehydrogenase associated protein  39.91 
 
 
273 aa  160  2e-38  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0107  formate dehydrogenase accessory protein  38.56 
 
 
278 aa  160  2e-38  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009511  Swit_1471  formate dehydrogenase family accessory protein FdhD  39.37 
 
 
261 aa  160  2e-38  Sphingomonas wittichii RW1  Bacteria  normal  0.0194722  normal 
 
 
-
 
NC_007925  RPC_4644  formate dehydrogenase accessory protein  38.63 
 
 
272 aa  160  2e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0444  formate dehydrogenase accessory protein  36.32 
 
 
287 aa  160  3e-38  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0806  formate dehydrogenase accessory protein  37.77 
 
 
276 aa  159  4e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4096  formate dehydrogenase family accessory protein FdhD  39.74 
 
 
274 aa  159  6e-38  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0622  formate dehydrogenase accessory protein  38.59 
 
 
275 aa  158  8e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0994  formate dehydrogenase family accessory protein FdhD  35.25 
 
 
295 aa  157  2e-37  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.506851  normal 
 
 
-
 
NC_010717  PXO_00469  formate dehydrogenase accessory protein  39.17 
 
 
273 aa  157  2e-37  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_007510  Bcep18194_A6044  formate dehydrogenase, subunit FdhD  35.97 
 
 
278 aa  156  3e-37  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0569  formate dehydrogenase family accessory protein FdhD  34.51 
 
 
274 aa  156  3e-37  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0723  formate dehydrogenase accessory protein  36.05 
 
 
277 aa  156  4e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3869  formate dehydrogenase family accessory protein FdhD  38.12 
 
 
263 aa  155  5.0000000000000005e-37  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0034  formate dehydrogenase family accessory protein FdhD  35.45 
 
 
280 aa  155  5.0000000000000005e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.663186 
 
 
-
 
NC_010172  Mext_3264  formate dehydrogenase family accessory protein FdhD  37.34 
 
 
291 aa  155  6e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.859238  normal  0.14649 
 
 
-
 
NC_011369  Rleg2_3635  formate dehydrogenase accessory protein  41.78 
 
 
274 aa  155  1e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222739 
 
 
-
 
NC_010725  Mpop_3460  formate dehydrogenase family accessory protein FdhD  37.45 
 
 
291 aa  154  1e-36  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3924  formate dehydrogenase accessory protein  40.89 
 
 
274 aa  154  1e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.789424  normal 
 
 
-
 
NC_011757  Mchl_3588  formate dehydrogenase family accessory protein FdhD  37.34 
 
 
291 aa  154  1e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3088  formate dehydrogenase accessory protein  37.34 
 
 
278 aa  154  1e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1390  formate dehydrogenase accessory protein FdhD  37.76 
 
 
306 aa  154  2e-36  Methylococcus capsulatus str. Bath  Bacteria  normal  0.780868  n/a   
 
 
-
 
NC_007925  RPC_4562  formate dehydrogenase family accessory protein FdhD  39.09 
 
 
277 aa  153  2.9999999999999998e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2149  formate dehydrogenase family accessory protein FdhD  34.43 
 
 
282 aa  152  4e-36  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2635  formate dehydrogenase family accessory protein FdhD  35.29 
 
 
274 aa  152  5e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.481847 
 
 
-
 
NC_008390  Bamb_2769  formate dehydrogenase family accessory protein FdhD  34.19 
 
 
274 aa  152  5.9999999999999996e-36  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2557  formate dehydrogenase accessory protein  39.83 
 
 
269 aa  152  7e-36  Jannaschia sp. CCS1  Bacteria  normal  0.266553  normal 
 
 
-
 
NC_010508  Bcenmc03_2744  formate dehydrogenase family accessory protein FdhD  35.18 
 
 
284 aa  152  8e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.135991  normal 
 
 
-
 
NC_008060  Bcen_2105  formate dehydrogenase family accessory protein FdhD  35.18 
 
 
284 aa  152  8e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.719105  n/a   
 
 
-
 
NC_008542  Bcen2424_2717  formate dehydrogenase family accessory protein FdhD  35.18 
 
 
284 aa  152  8e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  0.546813  n/a   
 
 
-
 
NC_011894  Mnod_0254  formate dehydrogenase family accessory protein FdhD  36.1 
 
 
299 aa  151  8.999999999999999e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0343903  n/a   
 
 
-
 
NC_010084  Bmul_0582  formate dehydrogenase family accessory protein FdhD  33.46 
 
 
274 aa  151  1e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3478  formate dehydrogenase family accessory protein FdhD  34.6 
 
 
292 aa  150  2e-35  Xanthobacter autotrophicus Py2  Bacteria  normal  0.739751  normal  0.474196 
 
 
-
 
NC_009484  Acry_0838  formate dehydrogenase family accessory protein FdhD  34.8 
 
 
275 aa  149  5e-35  Acidiphilium cryptum JF-5  Bacteria  normal  0.0377992  n/a   
 
 
-
 
NC_010681  Bphyt_0665  formate dehydrogenase family accessory protein FdhD  35.92 
 
 
279 aa  149  7e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  0.223999  normal 
 
 
-
 
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