More than 300 homologs were found in PanDaTox collection
for query gene Pden_3626 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_3626  AsnC family transcriptional regulator  100 
 
 
172 aa  349  1e-95  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00949051  normal 
 
 
-
 
NC_008048  Sala_1361  AsnC family transcriptional regulator  61.18 
 
 
167 aa  198  3.9999999999999996e-50  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.658235  normal 
 
 
-
 
NC_007802  Jann_2774  AsnC family transcriptional regulator  62.66 
 
 
150 aa  196  1.0000000000000001e-49  Jannaschia sp. CCS1  Bacteria  normal  0.315931  normal  0.712036 
 
 
-
 
NC_008043  TM1040_3163  AsnC family transcriptional regulator  61.64 
 
 
150 aa  194  7e-49  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2477  putative leucine-responsive regulatory protein  59.46 
 
 
154 aa  190  8e-48  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.728563 
 
 
-
 
NC_008228  Patl_0500  AsnC family transcriptional regulator  56.85 
 
 
150 aa  187  8e-47  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06912  transcriptional regulator  52.05 
 
 
171 aa  180  7e-45  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011313  VSAL_II1042  HTH-type transcriptional regulator, AsnC family  53.06 
 
 
147 aa  168  3e-41  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000908  transcriptional regulator AsnC family  57.6 
 
 
126 aa  152  2.9999999999999998e-36  Vibrio sp. Ex25  Bacteria  normal  0.499259  n/a   
 
 
-
 
NC_009457  VC0395_A1316  AsnC family transcriptional regulator  54.13 
 
 
110 aa  127  5.0000000000000004e-29  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1897  AsnC family transcriptional regulator  41.83 
 
 
163 aa  122  4e-27  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.129627 
 
 
-
 
NC_007802  Jann_3495  AsnC family transcriptional regulator  40.38 
 
 
176 aa  120  9.999999999999999e-27  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0302787 
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  40.28 
 
 
167 aa  119  1.9999999999999998e-26  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_008391  Bamb_5136  AsnC family transcriptional regulator  38.65 
 
 
177 aa  119  3e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.944237 
 
 
-
 
NC_010552  BamMC406_3278  AsnC family transcriptional regulator  41.38 
 
 
152 aa  118  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.882377 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  40.28 
 
 
167 aa  118  3.9999999999999996e-26  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_011365  Gdia_0671  transcriptional regulator, AsnC family  44.6 
 
 
145 aa  118  4.9999999999999996e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0943569  hitchhiker  0.00922833 
 
 
-
 
NC_008543  Bcen2424_3357  AsnC family transcriptional regulator  41.38 
 
 
152 aa  117  6e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.773724  normal 
 
 
-
 
NC_007511  Bcep18194_B2899  AsnC family transcriptional regulator  41.38 
 
 
154 aa  117  6e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4159  AsnC family transcriptional regulator  41.38 
 
 
152 aa  117  6e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.409138  normal 
 
 
-
 
NC_008061  Bcen_4810  AsnC family transcriptional regulator  41.38 
 
 
152 aa  117  6e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.402994  n/a   
 
 
-
 
NC_010086  Bmul_5229  AsnC family transcriptional regulator  41.38 
 
 
152 aa  117  7e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.104749  normal 
 
 
-
 
NC_010322  PputGB1_3168  AsnC family transcriptional regulator  42.76 
 
 
154 aa  117  7.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  0.714414  normal 
 
 
-
 
NC_009668  Oant_3945  AsnC family transcriptional regulator  41.01 
 
 
152 aa  116  9.999999999999999e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  116  1.9999999999999998e-25  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  115  1.9999999999999998e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  116  1.9999999999999998e-25  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  115  1.9999999999999998e-25  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  116  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  116  1.9999999999999998e-25  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  115  1.9999999999999998e-25  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  115  1.9999999999999998e-25  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  38.89 
 
 
168 aa  115  1.9999999999999998e-25  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_007912  Sde_2299  AsnC family transcriptional regulator  41.78 
 
 
156 aa  115  3e-25  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00073028 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  38.89 
 
 
167 aa  115  3e-25  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  38.19 
 
 
167 aa  115  3.9999999999999997e-25  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  38.89 
 
 
165 aa  114  5e-25  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  38.19 
 
 
167 aa  114  8.999999999999998e-25  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  38.89 
 
 
155 aa  113  1.0000000000000001e-24  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4941  AsnC family transcriptional regulator  41.38 
 
 
154 aa  113  1.0000000000000001e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.342761  normal  0.28224 
 
 
-
 
NC_007511  Bcep18194_B0321  AsnC family transcriptional regulator  42.07 
 
 
154 aa  113  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  0.396921  normal  0.759539 
 
 
-
 
NC_008543  Bcen2424_5327  AsnC family transcriptional regulator  41.38 
 
 
154 aa  113  2.0000000000000002e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.460187  normal 
 
 
-
 
NC_008061  Bcen_3039  AsnC family transcriptional regulator  41.38 
 
 
154 aa  113  2.0000000000000002e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0212716  n/a   
 
 
-
 
NC_009667  Oant_1446  AsnC family transcriptional regulator  45.11 
 
 
155 aa  112  3e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0922  alanine catabolic operon transcriptional regulator, putative  45.11 
 
 
155 aa  112  3e-24  Brucella suis 1330  Bacteria  normal  0.491746  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  35.53 
 
 
166 aa  112  4.0000000000000004e-24  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  38.19 
 
 
164 aa  111  5e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  38.19 
 
 
164 aa  111  5e-24  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_003296  RS02081  transcription regulator protein  40 
 
 
152 aa  111  5e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_008543  Bcen2424_4644  AsnC family transcriptional regulator  40 
 
 
155 aa  111  5e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.52735  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_012560  Avin_48000  leucin responsive regulatory protein  37.33 
 
 
162 aa  111  5e-24  Azotobacter vinelandii DJ  Bacteria  normal  0.964771  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_012892  B21_00900  hypothetical protein  38.19 
 
 
164 aa  111  5e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_008061  Bcen_3724  AsnC family transcriptional regulator  40 
 
 
155 aa  111  5e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.201895  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  111  5e-24  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_004311  BRA0773  AsnC family transcriptional regulator  40.29 
 
 
154 aa  111  6e-24  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2221  transcriptional regulator, AsnC family  40.14 
 
 
154 aa  111  6e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.17044  normal 
 
 
-
 
NC_009656  PSPA7_5122  putative transcriptional regulator  40.69 
 
 
157 aa  111  6e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_58510  AsnC family transcriptional regulator  40.69 
 
 
157 aa  111  6e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  39.86 
 
 
164 aa  110  7.000000000000001e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_010515  Bcenmc03_5660  AsnC family transcriptional regulator  40 
 
 
155 aa  110  7.000000000000001e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  110  8.000000000000001e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_013037  Dfer_3786  transcriptional regulator, AsnC family  33.56 
 
 
157 aa  110  8.000000000000001e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.173454  normal 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  110  8.000000000000001e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  110  8.000000000000001e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  110  8.000000000000001e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  110  8.000000000000001e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011982  Avi_8143  transcriptional regulator  40.6 
 
 
153 aa  110  9e-24  Agrobacterium vitis S4  Bacteria  normal  0.0298504  n/a   
 
 
-
 
NC_009092  Shew_0301  AsnC family transcriptional regulator  40.79 
 
 
166 aa  110  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2266  AsnC family transcriptional regulator  43.18 
 
 
153 aa  110  1.0000000000000001e-23  Paracoccus denitrificans PD1222  Bacteria  normal  0.400993  normal  0.321257 
 
 
-
 
NC_009504  BOV_A0723  AsnC family transcriptional regulator  39.57 
 
 
154 aa  110  1.0000000000000001e-23  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0399  AsnC family transcriptional regulator  38.93 
 
 
159 aa  110  1.0000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.318604 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  38.19 
 
 
164 aa  110  1.0000000000000001e-23  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_008025  Dgeo_0772  AsnC family transcriptional regulator  38.1 
 
 
156 aa  110  1.0000000000000001e-23  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.148197  normal 
 
 
-
 
NC_008044  TM1040_2738  AsnC family transcriptional regulator  41.67 
 
 
152 aa  110  1.0000000000000001e-23  Ruegeria sp. TM1040  Bacteria  normal  0.579335  normal 
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  37.86 
 
 
164 aa  109  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  37.5 
 
 
163 aa  109  2.0000000000000002e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_008752  Aave_3320  AsnC family transcriptional regulator  41.29 
 
 
170 aa  109  2.0000000000000002e-23  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.0097323  normal 
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  37.5 
 
 
164 aa  109  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  38.19 
 
 
164 aa  109  2.0000000000000002e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_1192  AsnC family transcriptional regulator  39.86 
 
 
163 aa  108  2.0000000000000002e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0505  AsnC family transcriptional regulator  38.78 
 
 
181 aa  109  2.0000000000000002e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.287922  n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  37.76 
 
 
158 aa  109  2.0000000000000002e-23  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2230  transcriptional regulator, AsnC family  40.56 
 
 
155 aa  109  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.685217  normal 
 
 
-
 
NC_009074  BURPS668_0361  leucine-responsive regulatory protein  39.31 
 
 
152 aa  108  3e-23  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  37.5 
 
 
164 aa  108  3e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_007434  BURPS1710b_0551  transcription regulator AsnC  39.31 
 
 
152 aa  108  3e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  37.5 
 
 
164 aa  108  3e-23  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_009485  BBta_0023  AsnC family transcriptional regulator  39.16 
 
 
159 aa  108  3e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.28543  normal  0.347248 
 
 
-
 
NC_007651  BTH_I0319  transcription regulator AsnC  38.62 
 
 
152 aa  108  3e-23  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2327  AsnC family transcriptional regulator  41.22 
 
 
151 aa  108  3e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0714715  normal 
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  37.5 
 
 
164 aa  108  3e-23  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_008825  Mpe_A0345  AsnC family transcriptional regulator  40.13 
 
 
160 aa  108  3e-23  Methylibium petroleiphilum PM1  Bacteria  normal  0.0877618  normal 
 
 
-
 
NC_009076  BURPS1106A_0374  leucine-responsive regulatory protein  39.31 
 
 
152 aa  108  3e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1324  AsnC family transcriptional regulator  40.28 
 
 
150 aa  108  3e-23  Chelativorans sp. BNC1  Bacteria  normal  0.719808  n/a   
 
 
-
 
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