Gene Shew_0301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0301 
Symbol 
ID4923906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp323549 
End bp324049 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content56% 
IMG OID640161825 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001092432 
Protein GI127511235 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGAC TACAACTCGA CAAGACCGAC ATTCAGATCC TCAAGTTACT GCAAGCCCAG 
GGACGCATGG CCAACCAAGA TCTGGCCGCA AGCGTCGGCC TGTCGCCCTC GCCCTGCTCG
CGCCGGGTCA AGGCGATGGA GGAGGCGGGC ATCATCGCCG GTTACGCCGC CTTAGTCGAT
GCCCCTTACT TTCAGTTAAC CCTGACCGCC TACGTGCAGG TGAGGCTGGA AAAACACACC
CAAGCGATAC TCGATGCATT CGAGCAGGCC ATCGACGGCT ATGACGAGGT ACTCGAATGC
GCCCTACTGA CAGGCAGCGA CGCCGATTAC CAACTCAAGG TCTTAGTCAG AGACATGGAT
GCCTTCAAAC ACTTCCTGCT AGAGAAGCTC ACCAGCAACC CGCATATCGC TGGCATACGC
TCAAGCTTCG TGCTTAAACA GGTCAAGAGC CGCACCGCTA TTCCCCTGCC TGAACTCGGC
ACTCAAGACG ATAAAGCATG A
 
Protein sequence
MTRLQLDKTD IQILKLLQAQ GRMANQDLAA SVGLSPSPCS RRVKAMEEAG IIAGYAALVD 
APYFQLTLTA YVQVRLEKHT QAILDAFEQA IDGYDEVLEC ALLTGSDADY QLKVLVRDMD
AFKHFLLEKL TSNPHIAGIR SSFVLKQVKS RTAIPLPELG TQDDKA