More than 300 homologs were found in PanDaTox collection
for query gene PC1_0416 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012880  Dd703_3489  methyl-accepting chemotaxis sensory transducer  68.69 
 
 
530 aa  695    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3613  methyl-accepting chemotaxis sensory transducer  70.97 
 
 
530 aa  741    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0416  methyl-accepting chemotaxis sensory transducer  100 
 
 
525 aa  1055    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.158805  n/a   
 
 
-
 
NC_013421  Pecwa_0495  methyl-accepting chemotaxis sensory transducer  94.29 
 
 
525 aa  1001    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  45.4 
 
 
576 aa  388  1e-106  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  42.31 
 
 
573 aa  340  4e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  41.52 
 
 
558 aa  338  9e-92  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  42.67 
 
 
613 aa  335  7.999999999999999e-91  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  54.88 
 
 
573 aa  334  2e-90  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  51.08 
 
 
520 aa  334  3e-90  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  39.46 
 
 
584 aa  333  6e-90  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_012880  Dd703_2488  methyl-accepting chemotaxis sensory transducer with Cache sensor  55.42 
 
 
512 aa  333  6e-90  Dickeya dadantii Ech703  Bacteria  normal  0.0783891  n/a   
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  51.12 
 
 
585 aa  331  2e-89  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_010622  Bphy_1586  methyl-accepting chemotaxis sensory transducer  42.64 
 
 
553 aa  331  2e-89  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  41.95 
 
 
594 aa  330  3e-89  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  45.31 
 
 
566 aa  330  4e-89  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  55.27 
 
 
597 aa  329  7e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  52.4 
 
 
519 aa  324  2e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  52.57 
 
 
556 aa  323  3e-87  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  53.53 
 
 
589 aa  323  4e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  40.12 
 
 
575 aa  322  8e-87  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007952  Bxe_B2784  methyl-accepting chemotaxis sensory transducer  55.69 
 
 
542 aa  322  8e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  39.59 
 
 
543 aa  320  3e-86  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  54.52 
 
 
519 aa  320  3e-86  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  45.02 
 
 
562 aa  320  5e-86  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010676  Bphyt_6769  methyl-accepting chemotaxis sensory transducer  57.23 
 
 
519 aa  318  1e-85  Burkholderia phytofirmans PsJN  Bacteria  normal  0.176172  normal  0.340215 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  52.19 
 
 
579 aa  318  2e-85  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_0412  methyl-accepting chemotaxis sensory transducer  41.1 
 
 
521 aa  315  9.999999999999999e-85  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  52.1 
 
 
586 aa  314  1.9999999999999998e-84  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  51.81 
 
 
556 aa  315  1.9999999999999998e-84  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  44.22 
 
 
581 aa  314  1.9999999999999998e-84  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_010002  Daci_0172  methyl-accepting chemotaxis sensory transducer  40.73 
 
 
550 aa  314  2.9999999999999996e-84  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  55 
 
 
559 aa  310  2.9999999999999997e-83  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  43.5 
 
 
555 aa  309  5.9999999999999995e-83  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_010622  Bphy_0137  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
515 aa  309  6.999999999999999e-83  Burkholderia phymatum STM815  Bacteria  normal  0.5368  normal 
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  42.5 
 
 
548 aa  308  1.0000000000000001e-82  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  52.61 
 
 
560 aa  307  3e-82  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  40.35 
 
 
650 aa  307  3e-82  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  47.21 
 
 
555 aa  307  4.0000000000000004e-82  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  53.39 
 
 
521 aa  306  4.0000000000000004e-82  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
579 aa  306  5.0000000000000004e-82  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  53.69 
 
 
521 aa  306  5.0000000000000004e-82  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
559 aa  306  6e-82  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  37.78 
 
 
560 aa  305  1.0000000000000001e-81  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.08 
 
 
515 aa  304  2.0000000000000002e-81  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_010625  Bphy_5545  methyl-accepting chemotaxis sensory transducer  52.07 
 
 
512 aa  304  2.0000000000000002e-81  Burkholderia phymatum STM815  Bacteria  normal  normal  0.857112 
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  48.08 
 
 
519 aa  305  2.0000000000000002e-81  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  52.76 
 
 
605 aa  304  2.0000000000000002e-81  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.69 
 
 
551 aa  304  3.0000000000000004e-81  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  51.52 
 
 
579 aa  304  3.0000000000000004e-81  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  54.21 
 
 
546 aa  304  3.0000000000000004e-81  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  52.08 
 
 
515 aa  303  5.000000000000001e-81  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  39.73 
 
 
555 aa  303  5.000000000000001e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5935  methyl-accepting chemotaxis sensory transducer  52.02 
 
 
520 aa  303  5.000000000000001e-81  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  52.45 
 
 
605 aa  303  6.000000000000001e-81  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  40.38 
 
 
569 aa  303  7.000000000000001e-81  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  52.44 
 
 
532 aa  302  9e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  44.09 
 
 
532 aa  302  9e-81  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  53.31 
 
 
512 aa  302  1e-80  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_010625  Bphy_5592  methyl-accepting chemotaxis sensory transducer  41.5 
 
 
567 aa  301  1e-80  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  52.13 
 
 
541 aa  301  1e-80  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  55.75 
 
 
552 aa  301  2e-80  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_013421  Pecwa_4084  methyl-accepting chemotaxis sensory transducer  51.3 
 
 
555 aa  301  2e-80  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  45.54 
 
 
611 aa  301  2e-80  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  37.84 
 
 
543 aa  301  2e-80  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6164  methyl-accepting chemotaxis sensory transducer  53.15 
 
 
544 aa  301  3e-80  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1091  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.76 
 
 
618 aa  300  3e-80  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  37.36 
 
 
553 aa  300  4e-80  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  53.89 
 
 
546 aa  300  5e-80  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  53.89 
 
 
546 aa  300  5e-80  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  53.89 
 
 
546 aa  300  5e-80  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  53.89 
 
 
546 aa  300  5e-80  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  53.89 
 
 
511 aa  300  6e-80  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  53.89 
 
 
526 aa  300  6e-80  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1408  methyl-accepting chemotaxis sensory transducer  39.96 
 
 
513 aa  299  7e-80  Ralstonia pickettii 12D  Bacteria  normal  0.0312904  normal  0.0311205 
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  44.82 
 
 
627 aa  299  9e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_010084  Bmul_1870  methyl-accepting chemotaxis sensory transducer  41.21 
 
 
562 aa  298  1e-79  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00389756 
 
 
-
 
NC_010682  Rpic_0995  methyl-accepting chemotaxis sensory transducer  53.18 
 
 
621 aa  299  1e-79  Ralstonia pickettii 12J  Bacteria  normal  normal  0.203772 
 
 
-
 
NC_010498  EcSMS35_1298  methyl-accepting chemotaxis protein II  43.79 
 
 
553 aa  298  2e-79  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00038087 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  49.85 
 
 
661 aa  297  4e-79  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  37.52 
 
 
556 aa  296  5e-79  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  49.09 
 
 
578 aa  296  6e-79  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  54.72 
 
 
515 aa  295  9e-79  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  50.65 
 
 
599 aa  296  9e-79  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0469  methyl-accepting chemotaxis sensory transducer  55.66 
 
 
549 aa  295  9e-79  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  49.39 
 
 
580 aa  295  9e-79  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2778  methyl-accepting chemotaxis sensory transducer  48.65 
 
 
544 aa  296  9e-79  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.643433  n/a   
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  45.76 
 
 
598 aa  295  1e-78  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  56.36 
 
 
557 aa  295  1e-78  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  56.36 
 
 
557 aa  295  1e-78  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2079  methyl-accepting chemotaxis protein II  39.85 
 
 
553 aa  295  1e-78  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.429347  hitchhiker  1.96177e-16 
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  39.07 
 
 
549 aa  295  1e-78  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_011205  SeD_A1326  methyl-accepting chemotaxis protein II  57.29 
 
 
553 aa  294  2e-78  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.452066  hitchhiker  2.3261e-17 
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  39.61 
 
 
513 aa  295  2e-78  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1203  methyl-accepting chemotaxis protein II  57.29 
 
 
553 aa  294  2e-78  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.697919  n/a   
 
 
-
 
NC_011083  SeHA_C2134  methyl-accepting chemotaxis protein II  57.29 
 
 
553 aa  294  2e-78  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  1.16019e-17 
 
 
-
 
NC_008060  Bcen_0963  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
557 aa  295  2e-78  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0423677  n/a   
 
 
-
 
NC_010676  Bphyt_6518  methyl-accepting chemotaxis sensory transducer  50.15 
 
 
514 aa  295  2e-78  Burkholderia phytofirmans PsJN  Bacteria  normal  0.73924  normal 
 
 
-
 
NC_011094  SeSA_A2074  methyl-accepting chemotaxis protein II  57.29 
 
 
553 aa  294  3e-78  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.162752  hitchhiker  0.000345874 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  56.36 
 
 
557 aa  294  3e-78  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
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