| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6769 |
|---|
| Symbol | |
|---|
| ID | 6277926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3100994 |
|---|
| End bp | 3102553 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642617797 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001890434 |
|---|
| Protein GI | 187921402 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.176172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.340215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTC TGACACTGAA ACAGAAGTTG TGGGTGCCGT TGCTGCTGTG CTGGGCCGCG
CTCCTGATCG TGACCGTTGT GAACGCGTAC GAAGCGCGTA ACGGTCAAAT GGACGCACGG
CGCGCGGATC TGGCCGACGT CACCGACATG GCGGTATCGA TCGTCGCGGA CTATGCGAAA
CAGGCCGACG CCGGCAAGCT CTCCGTCGAC GAAGCGAAGC AACAAGCGAT CGCCCGCATC
AATGCGCAAC GTTACGGTGC CTCGGGTTAT GTGACGATCG TGCGCAGCGA CTCGGTCATG
GTCGACCACC CGATGAGCCC GAAGCTGAAC GGCAAGGACA TGGGTGGTTT CCGCGACGCC
AAAGGCAACG CGCTGTATCA CGACATCGCT CAGGCCGGCG GCTCGGCGGC CGGCGCCGGA
TATCTGCGCT ACTGGTGGCC CAAACCCGGC GAAACGACAC CTAGCGAGAA GATCGGCTAT
GTGAAACGCT TCGCCCCGTG GGGCTGGGAC TTCATCGCCG GCGCTTACAT GGACGACATT
CAGGCGCAGT TCTACACGAC GCTCGCACGC TCGGCCGGCA TGCTCCTGGT ACTCGGCGTG
ATCGTGTCGT TCGTGGCGTC GCGCGTGGTG CGCAGTGTGT CGCGCTCGAT TGGCGGCGAG
CCTTCCGCCG CGGCCTCGAT TGCGATGCAG ATCGCGCGCG GCGATCTGGC CACTCGCATC
GAACTGCGCC GCGACGACAC GTCGAGCCTG CTGTTCTCGC TGCGTGAGAT GCGCAATCAA
CTCGCGTCCA CCGTCGCGCG GATCAAGAAC TCGGCGGAGA CGATCACCGT CGCCTCGAAA
GAAATCGCCG CGGGCAATCT GGATCTGTCG AGCCGCACCG AGGAACAGGC CGCGTCGTTG
CAGCAGACCG CCGCCAGCAT GGACGAACTC ACCAAGACCG TCACGCAGAA CGCCGACAAT
GCGGCCACTG CGTCCGAACT GGCTAGCGAC GCGTCGAGCA TCGCCGCGCG CGGTGGCCAG
GTGGTCAACG ACGTGGTCGA GAAAATGGCG GGTATCACCG ATAGTTCGCG CAAGATCGGC
GAGATCATCA GCGTGATCGA GGGCATCGCG TTCCAGACCA ATATTCTGGC GCTGAACGCA
GCGGTGGAAG CCGCGCGCGC CGGCGAAGAG GGTCGCGGCT TCGCGGTGGT CGCGGGCGAG
GTGCGCAATC TCGCGCAACG CAGCGCGACC GCGGCCAAGG AGATCAAAGT GTTGATCGAT
CAGTCGGTCG CGCAAGTCGG CGAAGGCTCG ACGCTCGCGG GCAAGGCGGG CAGCACGATC
GGCGAGGTAG TCGACGCGGT GCGCCGTGTG ACGGCTATCA TGAACGAGAT ATCAGCGGCT
TCGAAGGAAC AGAGTTCAGG TATCGGCGAA GTCAATCTCG CGATCCGTCA GATGGACGAC
GTGACGCAGC GCAATGCCGC ACTTGTCGAG CAGGCGGCCG CCGCGGCCGG TTCGCTGGAT
GAGCAGACCG AACAGCTGCG ACATGCCGTC GCCGTGTTCA AGGTCGAGCA AACTGTGTGA
|
|---|
| Protein sequence | MNRLTLKQKL WVPLLLCWAA LLIVTVVNAY EARNGQMDAR RADLADVTDM AVSIVADYAK
QADAGKLSVD EAKQQAIARI NAQRYGASGY VTIVRSDSVM VDHPMSPKLN GKDMGGFRDA
KGNALYHDIA QAGGSAAGAG YLRYWWPKPG ETTPSEKIGY VKRFAPWGWD FIAGAYMDDI
QAQFYTTLAR SAGMLLVLGV IVSFVASRVV RSVSRSIGGE PSAAASIAMQ IARGDLATRI
ELRRDDTSSL LFSLREMRNQ LASTVARIKN SAETITVASK EIAAGNLDLS SRTEEQAASL
QQTAASMDEL TKTVTQNADN AATASELASD ASSIAARGGQ VVNDVVEKMA GITDSSRKIG
EIISVIEGIA FQTNILALNA AVEAARAGEE GRGFAVVAGE VRNLAQRSAT AAKEIKVLID
QSVAQVGEGS TLAGKAGSTI GEVVDAVRRV TAIMNEISAA SKEQSSGIGE VNLAIRQMDD
VTQRNAALVE QAAAAAGSLD EQTEQLRHAV AVFKVEQTV
|
|---|
| |