More than 300 homologs were found in PanDaTox collection
for query gene Hlac_0871 on replicon NC_012029
Organism: Halorubrum lacusprofundi ATCC 49239



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012029  Hlac_0871  3-isopropylmalate dehydratase, small subunit  100 
 
 
217 aa  442  1e-123  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_013158  Huta_0643  3-isopropylmalate dehydratase, small subunit  73.4 
 
 
206 aa  311  3.9999999999999997e-84  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_013922  Nmag_0900  3-isopropylmalate dehydratase, small subunit  76.8 
 
 
223 aa  298  5e-80  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013743  Htur_2764  3-isopropylmalate dehydratase, small subunit  74.5 
 
 
211 aa  289  2e-77  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_2657  3-isopropylmalate dehydratase, small subunit  73.71 
 
 
214 aa  277  9e-74  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_011729  PCC7424_3629  isopropylmalate isomerase small subunit  53.81 
 
 
206 aa  224  5.0000000000000005e-58  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_3810  isopropylmalate isomerase small subunit  53.89 
 
 
197 aa  223  2e-57  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3761  isopropylmalate isomerase small subunit  53.89 
 
 
197 aa  223  2e-57  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3966  isopropylmalate isomerase small subunit  53.37 
 
 
202 aa  221  9e-57  Anabaena variabilis ATCC 29413  Bacteria  normal  0.05677  normal  0.0175805 
 
 
-
 
NC_014248  Aazo_5027  3-isopropylmalate dehydratase small subunit  53.89 
 
 
201 aa  220  1.9999999999999999e-56  'Nostoc azollae' 0708  Bacteria  normal  0.162476  n/a   
 
 
-
 
NC_011884  Cyan7425_1327  3-isopropylmalate dehydratase, small subunit  49.22 
 
 
197 aa  207  1e-52  Cyanothece sp. PCC 7425  Bacteria  normal  0.507856  normal  0.452578 
 
 
-
 
NC_007516  Syncc9605_0257  3-isopropylmalate dehydratase, small subunit  51.53 
 
 
204 aa  199  1.9999999999999998e-50  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2548  isopropylmalate isomerase small subunit  50.75 
 
 
202 aa  199  3e-50  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0488432  normal 
 
 
-
 
NC_014148  Plim_0321  3-isopropylmalate dehydratase, small subunit  48.74 
 
 
203 aa  199  3e-50  Planctomyces limnophilus DSM 3776  Bacteria  hitchhiker  0.00352929  n/a   
 
 
-
 
NC_008820  P9303_24681  3-isopropylmalate dehydratase small subunit  48.74 
 
 
210 aa  199  3e-50  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_2681  isopropylmalate isomerase small subunit  48.97 
 
 
201 aa  199  3e-50  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_1621  3-isopropylmalate dehydratase, small subunit  47.96 
 
 
206 aa  197  1.0000000000000001e-49  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1847  3-isopropylmalate dehydratase small subunit  49.74 
 
 
201 aa  196  3e-49  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_03331  3-isopropylmalate dehydratase small subunit  47.96 
 
 
206 aa  195  5.000000000000001e-49  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0257  3-isopropylmalate dehydratase, small subunit  45.27 
 
 
207 aa  194  8.000000000000001e-49  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.420219  n/a   
 
 
-
 
NC_008817  P9515_02881  3-isopropylmalate dehydratase small subunit  42.71 
 
 
206 aa  186  3e-46  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.130398  n/a   
 
 
-
 
NC_008816  A9601_02771  3-isopropylmalate dehydratase small subunit  44.28 
 
 
207 aa  185  4e-46  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.385201  n/a   
 
 
-
 
NC_007513  Syncc9902_2087  3-isopropylmalate dehydratase small subunit  47.45 
 
 
204 aa  183  2.0000000000000003e-45  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1602  3-isopropylmalate dehydratase, small subunit  47.67 
 
 
201 aa  183  2.0000000000000003e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0187865 
 
 
-
 
NC_009976  P9211_02811  3-isopropylmalate dehydratase small subunit  44.16 
 
 
207 aa  182  3e-45  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_009091  P9301_02781  3-isopropylmalate dehydratase small subunit  43.15 
 
 
212 aa  178  4.999999999999999e-44  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_0667  isopropylmalate isomerase small subunit  43.88 
 
 
202 aa  166  2.9999999999999998e-40  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1545  aconitate hydratase domain protein  42.63 
 
 
209 aa  152  4e-36  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.831045  n/a   
 
 
-
 
NC_009484  Acry_2148  3-isopropylmalate dehydratase, small subunit  38.86 
 
 
207 aa  132  3e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.0323042  n/a   
 
 
-
 
NC_011080  SNSL254_A0122  isopropylmalate isomerase small subunit  36.04 
 
 
201 aa  131  9e-30  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.14126  normal  0.46492 
 
 
-
 
NC_011205  SeD_A0119  isopropylmalate isomerase small subunit  36.55 
 
 
201 aa  131  9e-30  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0126  isopropylmalate isomerase small subunit  37.57 
 
 
201 aa  130  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.899902  normal  0.029238 
 
 
-
 
NC_011083  SeHA_C0121  isopropylmalate isomerase small subunit  37.04 
 
 
201 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.886111  normal  0.157977 
 
 
-
 
NC_011149  SeAg_B0126  isopropylmalate isomerase small subunit  37.04 
 
 
201 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0372  isopropylmalate isomerase small subunit  41.04 
 
 
201 aa  129  3e-29  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03088  isopropylmalate isomerase small subunit  37.43 
 
 
201 aa  128  5.0000000000000004e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1548  isopropylmalate isomerase small subunit  44.37 
 
 
204 aa  128  5.0000000000000004e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.165609  normal  0.0663452 
 
 
-
 
NC_009720  Xaut_1185  isopropylmalate isomerase small subunit  38.86 
 
 
201 aa  128  7.000000000000001e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  0.840345  normal 
 
 
-
 
NC_007802  Jann_0123  isopropylmalate isomerase small subunit  38 
 
 
201 aa  128  8.000000000000001e-29  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0296  isopropylmalate isomerase small subunit  45.64 
 
 
201 aa  127  9.000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.447651 
 
 
-
 
NC_011757  Mchl_0340  isopropylmalate isomerase small subunit  45.64 
 
 
201 aa  127  9.000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1960  isopropylmalate isomerase small subunit  40.32 
 
 
204 aa  127  1.0000000000000001e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0863  isopropylmalate isomerase small subunit  36.55 
 
 
212 aa  126  3e-28  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000359889  hitchhiker  0.000927879 
 
 
-
 
NC_010505  Mrad2831_0963  isopropylmalate isomerase small subunit  42.28 
 
 
200 aa  126  3e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0619  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  125  5e-28  Enterobacter sp. 638  Bacteria  normal  normal  0.12131 
 
 
-
 
NC_011353  ECH74115_0078  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  125  7e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2915  3-isopropylmalate dehydratase, small subunit  39.64 
 
 
195 aa  124  9e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0076  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  124  9e-28  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00073  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  124  1e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3527  3-isopropylmalate dehydratase, small subunit  35.98 
 
 
201 aa  124  1e-27  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3586  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  124  1e-27  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.0000223756 
 
 
-
 
NC_010658  SbBS512_E0065  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  124  1e-27  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0076  isopropylmalate isomerase small subunit  35.03 
 
 
201 aa  124  1e-27  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.28946 
 
 
-
 
NC_012892  B21_00072  hypothetical protein  35.98 
 
 
201 aa  124  1e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0074  isopropylmalate isomerase small subunit  35.98 
 
 
201 aa  124  1e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4358  isopropylmalate isomerase small subunit  37.78 
 
 
201 aa  123  2e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0342  isopropylmalate isomerase small subunit  37.71 
 
 
201 aa  123  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0234  isopropylmalate isomerase small subunit  40.94 
 
 
201 aa  123  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00814  isopropylmalate isomerase small subunit  36.32 
 
 
200 aa  123  2e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_0338  isopropylmalate isomerase small subunit  36.04 
 
 
201 aa  123  2e-27  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00370617  normal  0.442563 
 
 
-
 
NC_013456  VEA_001659  3-isopropylmalate dehydratase small subunit  36.32 
 
 
200 aa  124  2e-27  Vibrio sp. Ex25  Bacteria  normal  0.57325  n/a   
 
 
-
 
NC_004311  BRA0883  isopropylmalate isomerase small subunit  37.78 
 
 
201 aa  122  3e-27  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0827  isopropylmalate isomerase small subunit  37.78 
 
 
211 aa  122  3e-27  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0498  isopropylmalate isomerase small subunit  37.71 
 
 
201 aa  122  3e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.701221  normal 
 
 
-
 
NC_008345  Sfri_3817  isopropylmalate isomerase small subunit  35.03 
 
 
201 aa  122  3e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0742  isopropylmalate isomerase small subunit  36.41 
 
 
200 aa  122  4e-27  Serratia proteamaculans 568  Bacteria  normal  0.843634  normal 
 
 
-
 
NC_014151  Cfla_2315  3-isopropylmalate dehydratase, small subunit  37.24 
 
 
222 aa  122  4e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000291153 
 
 
-
 
NC_012856  Rpic12D_1446  3-isopropylmalate dehydratase, small subunit  35.68 
 
 
215 aa  122  4e-27  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00452839  normal  0.703119 
 
 
-
 
NC_010506  Swoo_4547  isopropylmalate isomerase small subunit  35.53 
 
 
201 aa  122  5e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  0.258236  normal  0.011903 
 
 
-
 
NC_007406  Nwi_2791  isopropylmalate isomerase small subunit  38.89 
 
 
201 aa  122  6e-27  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.204605  normal 
 
 
-
 
NC_013131  Caci_8048  3-isopropylmalate dehydratase, small subunit  40.11 
 
 
199 aa  122  6e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.52802  normal  0.948646 
 
 
-
 
NC_009485  BBta_0351  isopropylmalate isomerase small subunit  40.27 
 
 
200 aa  122  6e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.289741 
 
 
-
 
NC_007005  Psyr_1984  isopropylmalate isomerase small subunit  38.02 
 
 
213 aa  121  7e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.238956  normal  0.0387343 
 
 
-
 
NC_009952  Dshi_0083  isopropylmalate isomerase small subunit  38.86 
 
 
201 aa  121  7e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.384389  normal  0.18722 
 
 
-
 
NC_009707  JJD26997_2092  isopropylmalate isomerase small subunit  34.43 
 
 
200 aa  121  7e-27  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1382  3-isopropylmalate dehydratase, small subunit  35.08 
 
 
215 aa  121  7e-27  Ralstonia pickettii 12J  Bacteria  normal  0.758839  normal  0.419844 
 
 
-
 
NC_008787  CJJ81176_0014  isopropylmalate isomerase small subunit  33.86 
 
 
200 aa  121  7e-27  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2356  3-isopropylmalate dehydratase, small subunit  39.13 
 
 
213 aa  121  9e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08750  3-isopropylmalate dehydratase, small subunit  36.81 
 
 
201 aa  120  9.999999999999999e-27  Micrococcus luteus NCTC 2665  Bacteria  decreased coverage  0.00132575  n/a   
 
 
-
 
NC_007925  RPC_0230  isopropylmalate isomerase small subunit  40.27 
 
 
201 aa  120  9.999999999999999e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00838951 
 
 
-
 
NC_013421  Pecwa_3798  isopropylmalate isomerase small subunit  33.33 
 
 
200 aa  120  9.999999999999999e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3591  isopropylmalate isomerase small subunit  41.61 
 
 
201 aa  121  9.999999999999999e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3271  isopropylmalate isomerase small subunit  35.52 
 
 
208 aa  121  9.999999999999999e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3297  isopropylmalate isomerase small subunit  37.78 
 
 
201 aa  120  9.999999999999999e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0040  isopropylmalate isomerase small subunit  37.37 
 
 
200 aa  121  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00442875 
 
 
-
 
NC_012669  Bcav_1574  isopropylmalate isomerase small subunit  37.38 
 
 
212 aa  120  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1811  3-isopropylmalate dehydratase, small subunit  34.78 
 
 
240 aa  120  1.9999999999999998e-26  Halorhodospira halophila SL1  Bacteria  normal  0.382373  n/a   
 
 
-
 
NC_012880  Dd703_0629  isopropylmalate isomerase small subunit  33.85 
 
 
200 aa  120  1.9999999999999998e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0279  3-isopropylmalate dehydratase, small subunit  36.73 
 
 
195 aa  120  1.9999999999999998e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1424  3-isopropylmalate dehydratase, small subunit  36.99 
 
 
201 aa  120  1.9999999999999998e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3269  isopropylmalate isomerase small subunit  36.67 
 
 
209 aa  119  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1886  isopropylmalate isomerase small subunit  33.88 
 
 
200 aa  119  3e-26  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0216  3-isopropylmalate dehydratase, small subunit  40.27 
 
 
201 aa  119  3e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.247072  normal  0.136168 
 
 
-
 
NC_009636  Smed_3028  isopropylmalate isomerase small subunit  38.86 
 
 
201 aa  119  3e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.295047 
 
 
-
 
NC_010338  Caul_0215  isopropylmalate isomerase small subunit  36.14 
 
 
202 aa  119  3e-26  Caulobacter sp. K31  Bacteria  normal  normal  0.20437 
 
 
-
 
NC_013757  Gobs_4052  3-isopropylmalate dehydratase, small subunit  40.72 
 
 
203 aa  119  3.9999999999999996e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1147  3-isopropylmalate dehydratase, small subunit  39.6 
 
 
201 aa  119  3.9999999999999996e-26  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00108201 
 
 
-
 
NC_007954  Sden_0337  isopropylmalate isomerase small subunit  42.47 
 
 
201 aa  119  3.9999999999999996e-26  Shewanella denitrificans OS217  Bacteria  normal  0.999258  n/a   
 
 
-
 
NC_013235  Namu_1479  3-isopropylmalate dehydratase, small subunit  39.31 
 
 
195 aa  119  3.9999999999999996e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  0.113281  normal  0.730621 
 
 
-
 
NC_010501  PputW619_1549  isopropylmalate isomerase small subunit  37.82 
 
 
214 aa  119  4.9999999999999996e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.226385 
 
 
-
 
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