Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_8048 |
Symbol | |
ID | 8339426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 9340603 |
End bp | 9341202 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644961133 |
Product | 3-isopropylmalate dehydratase, small subunit |
Protein accession | YP_003118712 |
Protein GI | 256397148 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0066] 3-isopropylmalate dehydratase small subunit |
TIGRFAM ID | [TIGR00171] 3-isopropylmalate dehydratase, small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.52802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.948646 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAAGT TCACGACACA CACCGGGCGC GCGCTGCCGC TGCGCCGCTC CAACGTCGAC ACCGACCAGA TCATCCCGGC GGTGTACCTC AAGCGCATCA CGCGGACCGG TTTCGAGGAC GGGCTGTTCG CCGCCTGGCG CGCGGACCCG GAGTTCATCC TGAACCAGGA GCAGTACCAG GACGTGTCGG TGCTGGTCGC CGGTCCCGAC TTCGGCACCG GCTCCTCGCG CGAGCACGCG GTGTGGGCGC TGAAGGACTA CGGCTTCAAG GTGGTGCTCT CGGCGCGGTT CGCCGACATC TTCCGGGGCA ACTCCGCGAA GGACGGTCTG CTGACCGCCG TGCTGAAGCA GGAGGACATC GAGATCCTGT GGAAGCTCGT GGAGGAGAAC CCGGAGCTGG AGGTGACGGT CGATCTGCAG GCGCGCGAGG TGCGCGTCGA GGGTCACGTG TTCACCTTCG AGGTGGACGA CTACACGCGC TGGCGGCTGC TGGAGGGCTT GGACGACATC AGCCTGACGC TGCGGCACGC CGAGGAGATC GACGTTTTCG AAGAAGAGCG TCCCGGTTTC AAGCCGAAGA CGCTGCCGGC TGCGGTGTGA
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Protein sequence | MEKFTTHTGR ALPLRRSNVD TDQIIPAVYL KRITRTGFED GLFAAWRADP EFILNQEQYQ DVSVLVAGPD FGTGSSREHA VWALKDYGFK VVLSARFADI FRGNSAKDGL LTAVLKQEDI EILWKLVEEN PELEVTVDLQ AREVRVEGHV FTFEVDDYTR WRLLEGLDDI SLTLRHAEEI DVFEEERPGF KPKTLPAAV
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