Gene Caci_8048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8048 
Symbol 
ID8339426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9340603 
End bp9341202 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content66% 
IMG OID644961133 
Product3-isopropylmalate dehydratase, small subunit 
Protein accessionYP_003118712 
Protein GI256397148 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0066] 3-isopropylmalate dehydratase small subunit 
TIGRFAM ID[TIGR00171] 3-isopropylmalate dehydratase, small subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.52802 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.948646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAAGT TCACGACACA CACCGGGCGC GCGCTGCCGC TGCGCCGCTC CAACGTCGAC 
ACCGACCAGA TCATCCCGGC GGTGTACCTC AAGCGCATCA CGCGGACCGG TTTCGAGGAC
GGGCTGTTCG CCGCCTGGCG CGCGGACCCG GAGTTCATCC TGAACCAGGA GCAGTACCAG
GACGTGTCGG TGCTGGTCGC CGGTCCCGAC TTCGGCACCG GCTCCTCGCG CGAGCACGCG
GTGTGGGCGC TGAAGGACTA CGGCTTCAAG GTGGTGCTCT CGGCGCGGTT CGCCGACATC
TTCCGGGGCA ACTCCGCGAA GGACGGTCTG CTGACCGCCG TGCTGAAGCA GGAGGACATC
GAGATCCTGT GGAAGCTCGT GGAGGAGAAC CCGGAGCTGG AGGTGACGGT CGATCTGCAG
GCGCGCGAGG TGCGCGTCGA GGGTCACGTG TTCACCTTCG AGGTGGACGA CTACACGCGC
TGGCGGCTGC TGGAGGGCTT GGACGACATC AGCCTGACGC TGCGGCACGC CGAGGAGATC
GACGTTTTCG AAGAAGAGCG TCCCGGTTTC AAGCCGAAGA CGCTGCCGGC TGCGGTGTGA
 
Protein sequence
MEKFTTHTGR ALPLRRSNVD TDQIIPAVYL KRITRTGFED GLFAAWRADP EFILNQEQYQ 
DVSVLVAGPD FGTGSSREHA VWALKDYGFK VVLSARFADI FRGNSAKDGL LTAVLKQEDI
EILWKLVEEN PELEVTVDLQ AREVRVEGHV FTFEVDDYTR WRLLEGLDDI SLTLRHAEEI
DVFEEERPGF KPKTLPAAV