Gene Rcas_1548 details

Gene Information

• Locus tag: Rcas_1548
• Symbol: leuD
• ID: 5539024
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Roseiflexus castenholzii DSM 13941
• Kingdom: Bacteria
• Replicon accession: NC_009767
• Strand: -
• Start bp: 1987629
• End bp: 1988243
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640893686
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_001431659
• Protein GI: 156741530
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.165609
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.0663452
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCATCCCA TCTCAATCAT CACCGGGCGT ATTGTCGCCC TGCCAGCGCA CGATATCGAC 
ACCGATCAGA TCATTCCTGC CCGCTATCTC AAAGTCACCG ACAAATCAGG TCTGGCGGAG 
GGATTGTTCT ATGCCTGGCG CTTCGACGCC GAGGGCAAGC CCAACCCCGA TTTCGTTCTC 
AACCGTCCAG AGGCGCAGGG AGCGACGATC CTGGTCGCCG GACGAAACTT CGGTTGCGGC 
TCGTCACGTG AGCACGCGCC CTGGGCGCTT CAGGGGTACG GCTTCAAGGC GGTTATCAGT 
CCCTCCTTTG CCGACATCTT TCGCAATAAT GCCCTGAAAA ACGGGCTGTT GACCGTCCAG 
ACGGACGAGG AAACCTGGCA GCAATTGGTC AGTCTCTTCG AAGAAGACCC GACCACCGAA 
GTAATCATTG ACCTGGCGAC GCAGACGGTG ACGCTTCCCG ACGGACGGCA GGCGCGCTTT 
CCTATCGATC CGTTCACCAA ACATTGCCTG CTGCAAGGCA TCGATCAGAT GGGTTTTCTG 
CTGAACGAAG AAGATGCCAT CAGTGCATAT GAATCTGCGC ATCCACCGCG CGTTGTCACC 
ACTGCCAGGA GTTGA 

 

Protein sequence

MHPISIITGR IVALPAHDID TDQIIPARYL KVTDKSGLAE GLFYAWRFDA EGKPNPDFVL 
NRPEAQGATI LVAGRNFGCG SSREHAPWAL QGYGFKAVIS PSFADIFRNN ALKNGLLTVQ 
TDEETWQQLV SLFEEDPTTE VIIDLATQTV TLPDGRQARF PIDPFTKHCL LQGIDQMGFL 
LNEEDAISAY ESAHPPRVVT TARS