Gene Sama_0338 details

Gene Information

• Locus tag: Sama_0338
• Symbol: leuD
• ID: 4602594
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella amazonensis SB2B
• Kingdom: Bacteria
• Replicon accession: NC_008700
• Strand: +
• Start bp: 407423
• End bp: 408028
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 639779667
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_926219
• Protein GI: 119773479
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00370617
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.442563
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAGGCAT TTACTACTCA CACGGGGCTG GCGGTGGCCA TAGATTCGGC CAACATAGAC 
ACGGATCAGA TTATCCCCAA GCAGTTTTTG TCCAAGGTAA CCAAGGACGG CTTCGGTATT 
CATCTGTTCC ACGATTGGCG TTATCTGGAC GATGCCGGTG ACATCCCCAA TCCCGAGTTC 
AACCTCAACA AGCCAAGGTA TAAGGGAGCC ACTATTCTGC TGGCCCAAGA AAACTTTGGT 
TGCGGCTCCA GTCGCGAGCA CGCCCCCTGG GCGCTGGCGG ACTTTGGCCT GCGCGCCATT 
ATCGCGCCCA CCTTCGCTGA CATCTTCTAC GGCAACGCCA TCAATAACGG CCTGTTGCCG 
GTACGCTTGC CTGAAGCCGC GGTGCGTCAG TTGATGGACG AAGTGGAAGC CAATGAAGGT 
GCCGAGGTGA CTGTAGATCT GGAAAACCTC AAGGTGGTGT CGCCCTCGGG CGCCGAGTTT 
AGCTTTACCC TGGCTGAGTC TGCCCGTCAG AATCTGCTTA AGGGCCTGGA TGCCATCGGC 
CTGACCCTGG CCCACGAAGC GGCCATCAGC GAATACGAGT CACGCATACC GGCCTGGCGA 
CGCTGA 

 

Protein sequence

MQAFTTHTGL AVAIDSANID TDQIIPKQFL SKVTKDGFGI HLFHDWRYLD DAGDIPNPEF 
NLNKPRYKGA TILLAQENFG CGSSREHAPW ALADFGLRAI IAPTFADIFY GNAINNGLLP 
VRLPEAAVRQ LMDEVEANEG AEVTVDLENL KVVSPSGAEF SFTLAESARQ NLLKGLDAIG 
LTLAHEAAIS EYESRIPAWR R