| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4547 |
|---|
| Symbol | leuD |
|---|
| ID | 6118913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5512929 |
|---|
| End bp | 5513534 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641636118 |
|---|
| Product | isopropylmalate isomerase small subunit |
|---|
| Protein accession | YP_001762892 |
|---|
| Protein GI | 170728866 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0066] 3-isopropylmalate dehydratase small subunit |
|---|
| TIGRFAM ID | [TIGR00171] 3-isopropylmalate dehydratase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.258236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.011903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAT TTACTAAGCA TACCGGGCTG GCTGTGATGA TCGACAGTGC CAATGTCGAT
ACCGATCAGA TCATCCCTAA ACAGTTTTTA TCTAAAGTAA CTCGCGATGG TTTTGGTGTT
CACCTTTTTC ATGATTGGCG CTATCTCGAT GATGCCGGTG ATGAGCCAAA CCCTGAGTTC
ACTCTGAATC AGTCAAGATA CAAAGGTGCA TCGATACTTA TCTCTAAAGA GAATTTTGGT
TGTGGTTCAA GCCGAGAACA TGCGCCTTGG GCGTTAGCTG ACTTTGGCCT AAGAGCTATC
ATCGCTCCAA GTTTTGCCGA CATTTTCTAT GGCAACTCCA TTAATAATGG TTTACTGCCT
GTGCGTCTAA GTGATGTTGA AGTTCAGCAG TTGATGGATG AGGTTCAAGC CAATGAAGGG
GCTGAGATCA CAGTGGATCT GGAGGGATTA ACGGTGACAT CTCCCTCTGG TGCTGTGTTT
AGCTTTGAAA TCGCAGGCTC TGCTAGGCAT AACATGCTTA ATGGTTTAGA TGCGATTGGC
TTGACCTTAG CTTATGATGT GCAGATTGCG AGCTATGAGT CACAACTTCC AGCTTGGAAA
GCGTGA
|
|---|
| Protein sequence | MEAFTKHTGL AVMIDSANVD TDQIIPKQFL SKVTRDGFGV HLFHDWRYLD DAGDEPNPEF
TLNQSRYKGA SILISKENFG CGSSREHAPW ALADFGLRAI IAPSFADIFY GNSINNGLLP
VRLSDVEVQQ LMDEVQANEG AEITVDLEGL TVTSPSGAVF SFEIAGSARH NMLNGLDAIG
LTLAYDVQIA SYESQLPAWK A
|
|---|
| |