More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0705 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0705  DNA-binding protein HU  100 
 
 
93 aa  186  1e-46  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_1976  nucleoid DNA-binding protein  94.57 
 
 
93 aa  175  2e-43  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3268  histone family protein DNA-binding protein  70.65 
 
 
93 aa  133  8e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2507  histone family protein DNA-binding protein  68.48 
 
 
93 aa  129  1.0000000000000001e-29  Jonesia denitrificans DSM 20603  Bacteria  normal  0.748528  normal 
 
 
-
 
NC_013521  Sked_36290  nucleoid DNA-binding protein  66.3 
 
 
94 aa  127  6e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2752  histone family protein DNA-binding protein  63.74 
 
 
93 aa  122  1e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3371  histone family protein DNA-binding protein  55.68 
 
 
92 aa  106  1e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.557134  normal  0.106715 
 
 
-
 
NC_013169  Ksed_26150  nucleoid DNA-binding protein  48.86 
 
 
91 aa  92.8  1e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0298  histone family protein DNA-binding protein  44.32 
 
 
94 aa  87.4  6e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.406887  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  52.81 
 
 
91 aa  87  7e-17  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_012803  Mlut_19160  nucleoid DNA-binding protein  43.48 
 
 
93 aa  85.1  3e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.34702  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  50.55 
 
 
91 aa  83.6  9e-16  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_011886  Achl_3718  histone family protein DNA-binding protein  43.48 
 
 
95 aa  82.8  0.000000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_3916  histone family protein DNA-binding protein  43.48 
 
 
94 aa  83.2  0.000000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011879  Achl_4472  histone family protein DNA-binding protein  42.86 
 
 
93 aa  81.6  0.000000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00595179 
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  44.94 
 
 
90 aa  80.9  0.000000000000005  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  54.02 
 
 
90 aa  80.9  0.000000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2802  DNA-binding protein HU  47.25 
 
 
91 aa  79.7  0.00000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000000141643  n/a   
 
 
-
 
NC_008262  CPR_2488  DNA-binding protein HU  47.25 
 
 
91 aa  79.7  0.00000000000001  Clostridium perfringens SM101  Bacteria  unclonable  0.0000000000405619  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  43.82 
 
 
90 aa  79  0.00000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  42.7 
 
 
90 aa  79  0.00000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  42.7 
 
 
90 aa  78.2  0.00000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  48.86 
 
 
91 aa  77.8  0.00000000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  47.19 
 
 
94 aa  77.4  0.00000000000006  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  44.44 
 
 
91 aa  77.4  0.00000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3398  histone family protein DNA-binding protein  48.89 
 
 
92 aa  77  0.00000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000223697  n/a   
 
 
-
 
NC_007519  Dde_2058  histone-like DNA-binding protein  50.57 
 
 
90 aa  77  0.00000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.954956  n/a   
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  50.57 
 
 
90 aa  77  0.00000000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  41.57 
 
 
90 aa  77  0.00000000000008  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  44.83 
 
 
90 aa  76.3  0.0000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  42.7 
 
 
90 aa  76.3  0.0000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  47.19 
 
 
91 aa  76.3  0.0000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  44.94 
 
 
94 aa  75.9  0.0000000000002  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_014151  Cfla_1900  histone family protein DNA-binding protein  45.05 
 
 
93 aa  75.9  0.0000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.785636  normal 
 
 
-
 
NC_007604  Synpcc7942_1108  nucleoid protein Hbs  42.7 
 
 
91 aa  75.9  0.0000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0932961  normal  0.770831 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  42.7 
 
 
90 aa  75.5  0.0000000000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  48.89 
 
 
91 aa  75.9  0.0000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  44.94 
 
 
94 aa  75.9  0.0000000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  48.31 
 
 
90 aa  75.9  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  44.94 
 
 
91 aa  74.7  0.0000000000003  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1910  histone family protein DNA-binding protein  47.73 
 
 
90 aa  75.1  0.0000000000003  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000000311196  n/a   
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  47.25 
 
 
91 aa  75.1  0.0000000000003  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  47.19 
 
 
91 aa  74.7  0.0000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  43.33 
 
 
91 aa  74.7  0.0000000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_002950  PG0121  DNA-binding protein HU  44.19 
 
 
88 aa  74.3  0.0000000000005  Porphyromonas gingivalis W83  Bacteria  n/a    hitchhiker  0.00022412 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  43.68 
 
 
90 aa  73.9  0.0000000000006  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  46.67 
 
 
91 aa  73.9  0.0000000000007  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  48.35 
 
 
90 aa  73.2  0.000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  45.56 
 
 
92 aa  73.6  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  48.31 
 
 
91 aa  72  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  48.31 
 
 
90 aa  72.4  0.000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  44.94 
 
 
90 aa  72.4  0.000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_008554  Sfum_1430  histone family protein DNA-binding protein  44.94 
 
 
90 aa  72.4  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000153062  normal  0.144736 
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  47.19 
 
 
91 aa  71.6  0.000000000003  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  44.83 
 
 
90 aa  71.6  0.000000000003  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_007777  Francci3_3619  histone-like DNA-binding protein  45.56 
 
 
94 aa  72  0.000000000003  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  43.82 
 
 
91 aa  72  0.000000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  44.94 
 
 
90 aa  72  0.000000000003  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  45.56 
 
 
95 aa  71.2  0.000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  45.56 
 
 
91 aa  71.2  0.000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011883  Ddes_1090  histone family protein DNA-binding protein  47.19 
 
 
90 aa  71.2  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3247  histone-like DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia sp. 383  Bacteria  normal  normal  0.704477 
 
 
-
 
NC_010084  Bmul_0066  histone family protein DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  43.82 
 
 
95 aa  71.2  0.000000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_010508  Bcenmc03_0084  histone family protein DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0005  histone-like DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.129264  n/a   
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  39.56 
 
 
106 aa  71.2  0.000000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_010551  BamMC406_0065  histone family protein DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  43.82 
 
 
90 aa  71.6  0.000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008390  Bamb_0055  histone family protein DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0065  histone family protein DNA-binding protein  41.57 
 
 
92 aa  71.2  0.000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0004  DNA-binding protein HU-alpha  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  38.2 
 
 
90 aa  71.2  0.000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006348  BMA2913  DNA-binding protein HU, form B  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  0.5361  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  44.44 
 
 
91 aa  70.9  0.000000000005  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_008836  BMA10229_A1629  DNA-binding protein HU, form B  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0004  DNA-binding protein HU-alpha  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3397  DNA-binding protein HU, form B  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia mallei SAVP1  Bacteria  normal  0.218557  n/a   
 
 
-
 
NC_009080  BMA10247_2972  DNA-binding protein HU-alpha  41.57 
 
 
92 aa  71.2  0.000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3067  histone family protein DNA-binding protein  41.57 
 
 
92 aa  70.9  0.000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0353619 
 
 
-
 
NC_009483  Gura_1918  histone family protein DNA-binding protein  41.57 
 
 
91 aa  70.9  0.000000000006  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000897645  n/a   
 
 
-
 
NC_007651  BTH_I0004  DNA-binding protein HU-alpha  42.05 
 
 
126 aa  70.9  0.000000000006  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  43.33 
 
 
91 aa  70.5  0.000000000007  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  44.94 
 
 
90 aa  70.5  0.000000000007  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_012855  Rpic12D_5039  histone family protein DNA-binding protein  40.91 
 
 
94 aa  70.5  0.000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.889388  normal 
 
 
-
 
NC_011662  Tmz1t_0440  histone family protein DNA-binding protein  43.18 
 
 
91 aa  70.1  0.000000000009  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  44.83 
 
 
90 aa  70.1  0.000000000009  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_007348  Reut_B4039  HU family DNA-binding protein  51.69 
 
 
93 aa  69.7  0.00000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  43.82 
 
 
90 aa  69.7  0.00000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_007951  Bxe_A4504  DNA-binding protein HU-alpha  40.45 
 
 
92 aa  69.7  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.806931 
 
 
-
 
NC_007974  Rmet_4749  histone-like DNA-binding protein  51.69 
 
 
93 aa  69.7  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.188687 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  46.07 
 
 
90 aa  69.7  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  43.33 
 
 
90 aa  69.7  0.00000000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
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