More than 300 homologs were found in PanDaTox collection
for query gene CPF_1139 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_1139  DNA-binding response regulator  100 
 
 
227 aa  447  1e-125  Clostridium perfringens ATCC 13124  Bacteria  normal  0.034136  n/a   
 
 
-
 
NC_008527  LACR_1845  DNA-binding response regulator  40.72 
 
 
225 aa  192  4e-48  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0738  two component transcriptional regulator, winged helix family  39.82 
 
 
226 aa  185  6e-46  Eggerthella lenta DSM 2243  Bacteria  decreased coverage  0.0000482292  normal 
 
 
-
 
NC_011725  BCB4264_A0608  DNA-binding response regulator  37.22 
 
 
223 aa  179  2e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0634  DNA-binding response regulator  37.22 
 
 
223 aa  178  8e-44  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0985  DNA-binding response regulator CiaR  38.91 
 
 
226 aa  176  2e-43  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.447626  n/a   
 
 
-
 
NC_011772  BCG9842_B4731  DNA-binding response regulator  37.22 
 
 
223 aa  177  2e-43  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0627  DNA-binding response regulator  37.67 
 
 
223 aa  176  2e-43  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0482  response regulator  36.77 
 
 
223 aa  175  5e-43  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0484  response regulator  36.77 
 
 
229 aa  175  5e-43  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0485  two component transcriptional regulator  36.32 
 
 
223 aa  175  5e-43  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0540  DNA-binding response regulator  37.22 
 
 
223 aa  174  7e-43  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0571  DNA-binding response regulator  37.22 
 
 
223 aa  174  7e-43  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0702  DNA-binding response regulator  36.32 
 
 
223 aa  174  9e-43  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_10550  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  37.78 
 
 
225 aa  169  4e-41  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_1810  DNA-binding response regulator  35.75 
 
 
233 aa  164  1.0000000000000001e-39  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0562957  n/a   
 
 
-
 
NC_009487  SaurJH9_1476  two component transcriptional regulator  35.59 
 
 
219 aa  148  8e-35  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  35.59 
 
 
219 aa  148  8e-35  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_010002  Daci_2714  two component transcriptional regulator  34.84 
 
 
221 aa  147  2.0000000000000003e-34  Delftia acidovorans SPH-1  Bacteria  normal  0.439006  normal 
 
 
-
 
NC_014248  Aazo_2223  winged helix family two component transcriptional regulator  38.33 
 
 
229 aa  145  6e-34  'Nostoc azollae' 0708  Bacteria  normal  0.335669  n/a   
 
 
-
 
NC_008528  OEOE_0142  DNA-binding response regulator  31.22 
 
 
231 aa  145  6e-34  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0154  two component transcriptional regulator, winged helix family  40.64 
 
 
220 aa  143  2e-33  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.443854  n/a   
 
 
-
 
NC_007973  Rmet_3016  two component transcriptional regulator  34.39 
 
 
221 aa  144  2e-33  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00666033 
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  35.29 
 
 
224 aa  142  3e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_008346  Swol_2177  response regulator receiver protein  36.53 
 
 
223 aa  143  3e-33  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00323539  n/a   
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  33.03 
 
 
225 aa  143  3e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1620  two component transcriptional regulator  35.75 
 
 
227 aa  142  4e-33  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000174219  n/a   
 
 
-
 
NC_007347  Reut_A3389  two component transcriptional regulator  36.96 
 
 
234 aa  142  5e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.413911  n/a   
 
 
-
 
NC_007413  Ava_3453  two component transcriptional regulator  37.91 
 
 
224 aa  141  7e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3535  two component transcriptional regulator  35.65 
 
 
234 aa  140  1.9999999999999998e-32  Cupriavidus metallidurans CH34  Bacteria  normal  0.58717  normal 
 
 
-
 
NC_011138  MADE_03384  response regulator  35.84 
 
 
221 aa  140  1.9999999999999998e-32  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.000742618  n/a   
 
 
-
 
NC_007005  Psyr_3965  response regulator receiver:transcriptional regulatory protein, C-terminal  35.5 
 
 
223 aa  139  3e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0310  two component transcriptional regulator  32.59 
 
 
223 aa  139  3e-32  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.859655 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  33.04 
 
 
240 aa  139  3.9999999999999997e-32  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  33.03 
 
 
228 aa  139  4.999999999999999e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_011662  Tmz1t_1421  two component transcriptional regulator, winged helix family  33.33 
 
 
230 aa  139  4.999999999999999e-32  Thauera sp. MZ1T  Bacteria  normal  0.0283266  n/a   
 
 
-
 
NC_004578  PSPTO_4231  DNA-binding response regulator TctD  35.06 
 
 
223 aa  138  7e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  37.22 
 
 
226 aa  138  7e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2570  two component transcriptional regulator  33.48 
 
 
222 aa  138  8.999999999999999e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000747651 
 
 
-
 
NC_007347  Reut_A3437  two component transcriptional regulator  36.32 
 
 
225 aa  138  8.999999999999999e-32  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0670  two component transcriptional regulator  31.25 
 
 
266 aa  138  8.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.293028 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  32.43 
 
 
225 aa  137  8.999999999999999e-32  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0809  DNA-binding response regulator  31.7 
 
 
247 aa  137  1e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0919  two component transcriptional regulator, winged helix family  30.8 
 
 
227 aa  137  1e-31  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.767242 
 
 
-
 
NC_009012  Cthe_0799  two component transcriptional regulator  34.22 
 
 
225 aa  137  1e-31  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0093  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.51453 
 
 
-
 
NC_010084  Bmul_0075  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0813  DNA-binding response regulator  31.7 
 
 
247 aa  137  2e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0618873  n/a   
 
 
-
 
NC_009074  BURPS668_4004  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2924  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  33.48 
 
 
225 aa  137  2e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_31270  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  33.48 
 
 
221 aa  136  2e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.014564  normal  0.249814 
 
 
-
 
NC_009076  BURPS1106A_4078  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0729773  n/a   
 
 
-
 
NC_007434  BURPS1710b_0208  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.857207  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3386  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2983  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3256  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia sp. 383  Bacteria  normal  normal  0.430005 
 
 
-
 
NC_010622  Bphy_3057  two component transcriptional regulator  35.11 
 
 
228 aa  136  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I3339  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0604  two component transcriptional regulator  30.49 
 
 
227 aa  137  2e-31  Shewanella baltica OS185  Bacteria  decreased coverage  0.00704602  n/a   
 
 
-
 
NC_007951  Bxe_A0008  two component transcriptional regulator  34.67 
 
 
228 aa  136  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1619  DNA-binding response regulator  35.11 
 
 
230 aa  137  2e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2980  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0632  two component transcriptional regulator  30.49 
 
 
227 aa  137  2e-31  Shewanella baltica OS195  Bacteria  normal  0.157641  normal 
 
 
-
 
NC_008390  Bamb_0066  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.530384  n/a   
 
 
-
 
NC_010551  BamMC406_0074  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.948307  normal 
 
 
-
 
NC_008542  Bcen2424_0075  two component transcriptional regulator  35.11 
 
 
230 aa  136  2e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.280185  n/a   
 
 
-
 
NC_010681  Bphyt_3924  two component transcriptional regulator, winged helix family  34.67 
 
 
228 aa  136  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.154255  normal 
 
 
-
 
NC_012850  Rleg_3643  two component transcriptional regulator, winged helix family  31.84 
 
 
225 aa  136  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1354  two component transcriptional regulator  34.51 
 
 
223 aa  135  4e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.776412  normal 
 
 
-
 
NC_007973  Rmet_3585  two component transcriptional regulator  36.77 
 
 
224 aa  135  4e-31  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  36.61 
 
 
226 aa  135  4e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3296  two component transcriptional regulator, winged helix family  30.94 
 
 
260 aa  135  5e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0174877  normal 
 
 
-
 
NC_013510  Tcur_1461  two component transcriptional regulator, winged helix family  31.11 
 
 
225 aa  135  5e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.616357  n/a   
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  32.43 
 
 
239 aa  135  6.0000000000000005e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  31.56 
 
 
235 aa  135  6.0000000000000005e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0439  two component transcriptional regulator  31.39 
 
 
253 aa  135  7.000000000000001e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3341  two component transcriptional regulator, winged helix family  31.39 
 
 
225 aa  135  7.000000000000001e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.219699 
 
 
-
 
NC_011662  Tmz1t_0160  two component transcriptional regulator, winged helix family  34.5 
 
 
229 aa  135  7.000000000000001e-31  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3127  response regulator receiver:transcriptional regulatory protein, C-terminal  29.96 
 
 
227 aa  135  8e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.674952  normal 
 
 
-
 
NC_010730  SYO3AOP1_1480  two component transcriptional regulator, winged helix family  37.67 
 
 
219 aa  134  9e-31  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.000000000681553  n/a   
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  36.84 
 
 
234 aa  134  9.999999999999999e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0271  DNA-binding response regulator  31.25 
 
 
247 aa  134  9.999999999999999e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0429  response regulator receiver:transcriptional regulatory protein, C-terminal  32.14 
 
 
223 aa  134  9.999999999999999e-31  Dechloromonas aromatica RCB  Bacteria  normal  0.199286  decreased coverage  0.000258733 
 
 
-
 
NC_007348  Reut_B3961  heavy metal response regulator  31.56 
 
 
229 aa  134  9.999999999999999e-31  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00889091  n/a   
 
 
-
 
NC_010831  Cphamn1_0990  two component transcriptional regulator, winged helix family  34.22 
 
 
222 aa  134  9.999999999999999e-31  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.000957791  decreased coverage  0.0000715536 
 
 
-
 
NC_008836  BMA10229_A2405  DNA-binding response regulator  31.11 
 
 
250 aa  134  9.999999999999999e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0552978  n/a   
 
 
-
 
NC_007651  BTH_I0642  DNA-binding response regulator  31.25 
 
 
291 aa  134  9.999999999999999e-31  Burkholderia thailandensis E264  Bacteria  normal  0.743353  n/a   
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  32.43 
 
 
224 aa  134  9.999999999999999e-31  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  35.87 
 
 
226 aa  134  9.999999999999999e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_0018  DNA-binding response regulator  31.25 
 
 
247 aa  134  9.999999999999999e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2231  two component transcriptional regulator, winged helix family  33.33 
 
 
226 aa  134  9.999999999999999e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  36.32 
 
 
226 aa  134  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_008699  Noca_2006  response regulator receiver  33.63 
 
 
223 aa  134  9.999999999999999e-31  Nocardioides sp. JS614  Bacteria  normal  0.379718  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  34.05 
 
 
236 aa  134  9.999999999999999e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2671  DNA-binding response regulator  31.25 
 
 
247 aa  134  9.999999999999999e-31  Burkholderia mallei SAVP1  Bacteria  normal  0.84234  n/a   
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  32.13 
 
 
224 aa  134  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_013132  Cpin_3739  two component transcriptional regulator, winged helix family  37.55 
 
 
266 aa  134  1.9999999999999998e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.453489  normal  0.0202921 
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  32.13 
 
 
224 aa  134  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0802  two component transcriptional regulator  35.45 
 
 
220 aa  133  1.9999999999999998e-30  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
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