More than 300 homologs were found in PanDaTox collection
for query gene Shew_0726 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  72.06 
 
 
475 aa  713    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  72.76 
 
 
503 aa  726    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  72.51 
 
 
502 aa  723    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  71.98 
 
 
502 aa  727    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
494 aa  1008    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  74.4 
 
 
485 aa  736    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  73.2 
 
 
499 aa  728    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  72.96 
 
 
493 aa  728    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  68.67 
 
 
496 aa  694    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  66.73 
 
 
504 aa  654    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  72.38 
 
 
484 aa  718    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  73.13 
 
 
484 aa  721    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  70.18 
 
 
482 aa  702    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  73.48 
 
 
478 aa  727    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  71.18 
 
 
509 aa  734    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  52.13 
 
 
435 aa  451  1e-125  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  58.87 
 
 
448 aa  446  1.0000000000000001e-124  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  39.84 
 
 
456 aa  348  1e-94  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  39.84 
 
 
471 aa  343  5e-93  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  38.18 
 
 
457 aa  334  2e-90  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  39.49 
 
 
464 aa  328  2.0000000000000001e-88  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  39.59 
 
 
465 aa  327  3e-88  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  37.77 
 
 
466 aa  327  3e-88  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  36.98 
 
 
466 aa  326  7e-88  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  38.77 
 
 
457 aa  315  1.9999999999999998e-84  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  37.7 
 
 
470 aa  311  1e-83  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  35.67 
 
 
461 aa  311  2e-83  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  35.4 
 
 
447 aa  307  4.0000000000000004e-82  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  44.76 
 
 
451 aa  306  8.000000000000001e-82  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  38.77 
 
 
450 aa  304  2.0000000000000002e-81  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  37.6 
 
 
473 aa  304  3.0000000000000004e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  37.92 
 
 
487 aa  302  8.000000000000001e-81  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
473 aa  301  1e-80  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  37 
 
 
470 aa  301  1e-80  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
473 aa  301  1e-80  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  37.05 
 
 
459 aa  300  4e-80  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.52 
 
 
460 aa  299  8e-80  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  38.15 
 
 
449 aa  299  9e-80  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  36.8 
 
 
463 aa  299  9e-80  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  36.62 
 
 
457 aa  298  1e-79  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  36.62 
 
 
457 aa  299  1e-79  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  38.9 
 
 
515 aa  298  2e-79  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  37.2 
 
 
456 aa  298  2e-79  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  43.4 
 
 
502 aa  297  3e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  36.51 
 
 
483 aa  296  5e-79  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  40.76 
 
 
452 aa  295  9e-79  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  41.75 
 
 
458 aa  295  1e-78  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  35.14 
 
 
449 aa  294  2e-78  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  41.34 
 
 
460 aa  294  3e-78  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  39.09 
 
 
461 aa  294  3e-78  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  36.22 
 
 
450 aa  294  3e-78  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  37.78 
 
 
448 aa  293  4e-78  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  41.67 
 
 
452 aa  293  5e-78  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  39.09 
 
 
461 aa  293  6e-78  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  39.09 
 
 
461 aa  293  6e-78  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  42.2 
 
 
453 aa  293  6e-78  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  39.09 
 
 
461 aa  293  6e-78  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  42.24 
 
 
501 aa  293  6e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  39.09 
 
 
461 aa  293  6e-78  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  42.2 
 
 
453 aa  292  8e-78  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  38.17 
 
 
461 aa  292  9e-78  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  43.21 
 
 
471 aa  291  1e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  36.93 
 
 
503 aa  292  1e-77  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  38.46 
 
 
456 aa  291  1e-77  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  43.25 
 
 
471 aa  291  2e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  40.83 
 
 
463 aa  291  2e-77  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0922  two component, sigma54 specific, Fis family transcriptional regulator  35.87 
 
 
462 aa  290  3e-77  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.554455  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  37.87 
 
 
466 aa  290  4e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0976  two component, sigma54 specific, transcriptional regulator, Fis family  36.45 
 
 
1079 aa  290  5.0000000000000004e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  36.82 
 
 
457 aa  290  6e-77  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  36.85 
 
 
455 aa  289  6e-77  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_011145  AnaeK_0978  two component, sigma54 specific, transcriptional regulator, Fis family  36.45 
 
 
466 aa  289  6e-77  Anaeromyxobacter sp. K  Bacteria  normal  0.0932912  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  36.55 
 
 
458 aa  289  7e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  35.8 
 
 
465 aa  289  7e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  37.3 
 
 
444 aa  288  1e-76  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  41.73 
 
 
451 aa  289  1e-76  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  38.7 
 
 
452 aa  288  1e-76  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  38.35 
 
 
448 aa  288  1e-76  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01588  two-component system, response regulator  35.74 
 
 
464 aa  288  2e-76  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.396226  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  39.77 
 
 
470 aa  288  2e-76  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  36.75 
 
 
457 aa  288  2e-76  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  41.3 
 
 
473 aa  288  2e-76  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  40.47 
 
 
452 aa  287  4e-76  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  42.75 
 
 
470 aa  287  4e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  35.07 
 
 
458 aa  286  7e-76  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  36.6 
 
 
450 aa  286  8e-76  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  35.08 
 
 
511 aa  285  9e-76  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  36.58 
 
 
455 aa  285  1.0000000000000001e-75  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  39.7 
 
 
454 aa  285  1.0000000000000001e-75  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3419  two component, sigma54 specific, transcriptional regulator, Fis family  35.73 
 
 
455 aa  285  1.0000000000000001e-75  Anaeromyxobacter sp. K  Bacteria  normal  0.683267  n/a   
 
 
-
 
NC_008607  Ppro_3647  two component, sigma54 specific, Fis family transcriptional regulator  39.42 
 
 
451 aa  285  1.0000000000000001e-75  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  42.86 
 
 
466 aa  285  2.0000000000000002e-75  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  40.41 
 
 
459 aa  285  2.0000000000000002e-75  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  41.22 
 
 
451 aa  284  3.0000000000000004e-75  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_007760  Adeh_3338  two component, sigma54 specific, Fis family transcriptional regulator  35.33 
 
 
453 aa  283  3.0000000000000004e-75  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.693368  n/a   
 
 
-
 
NC_009832  Spro_4883  nitrogen regulation protein NR(I)  35.54 
 
 
470 aa  284  3.0000000000000004e-75  Serratia proteamaculans 568  Bacteria  normal  0.177074  hitchhiker  0.0000322182 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  33.2 
 
 
459 aa  284  3.0000000000000004e-75  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  41.99 
 
 
457 aa  283  4.0000000000000003e-75  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_011662  Tmz1t_0382  two component, sigma54 specific, transcriptional regulator, Fis family  35.6 
 
 
451 aa  283  4.0000000000000003e-75  Thauera sp. MZ1T  Bacteria  normal  0.803996  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  41.47 
 
 
456 aa  283  5.000000000000001e-75  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
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