More than 300 homologs were found in PanDaTox collection
for query gene EcSMS35_0077 on replicon NC_010498
Organism: Escherichia coli SMS-3-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_0387  isopropylmalate isomerase large subunit  73.22 
 
 
468 aa  706  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0075  isopropylmalate isomerase large subunit  99.79 
 
 
466 aa  962  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0395  isopropylmalate isomerase large subunit  71.77 
 
 
466 aa  682  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  2.43407e-05 
 
 
-
 
NC_009832  Spro_0743  isopropylmalate isomerase large subunit  87.53 
 
 
466 aa  823  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3826  isopropylmalate isomerase large subunit  70.91 
 
 
466 aa  675  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0413  isopropylmalate isomerase large subunit  73.43 
 
 
468 aa  707  Shewanella baltica OS223  Bacteria  normal  hitchhiker  1.69798e-10 
 
 
-
 
NC_007954  Sden_0336  isopropylmalate isomerase large subunit  71.92 
 
 
482 aa  691  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  85.99 
 
 
476 aa  824  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0399  isopropylmalate isomerase large subunit  73.22 
 
 
468 aa  706  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000573464 
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  85.99 
 
 
476 aa  824  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3797  isopropylmalate isomerase large subunit  86.48 
 
 
466 aa  828  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  85.99 
 
 
476 aa  824  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3585  isopropylmalate isomerase large subunit  99.79 
 
 
466 aa  966  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000478946 
 
 
-
 
NC_010498  EcSMS35_0077  isopropylmalate isomerase large subunit  100 
 
 
466 aa  966  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.387894 
 
 
-
 
NC_010506  Swoo_4548  isopropylmalate isomerase large subunit  70.47 
 
 
466 aa  674  Shewanella woodyi ATCC 51908  Bacteria  normal  0.182173  normal  0.0136159 
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  66.95 
 
 
472 aa  649  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_011353  ECH74115_0079  isopropylmalate isomerase large subunit  99.79 
 
 
466 aa  962  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0077  isopropylmalate isomerase large subunit  99.79 
 
 
466 aa  966  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00815  isopropylmalate isomerase large subunit  81.08 
 
 
466 aa  774  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_0630  3-isopropylmalate dehydratase, large subunit  86.91 
 
 
466 aa  828  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00073  hypothetical protein  100 
 
 
466 aa  966  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3470  isopropylmalate isomerase large subunit  71.55 
 
 
466 aa  687  Shewanella loihica PV-4  Bacteria  normal  0.510231  normal  0.406012 
 
 
-
 
NC_009052  Sbal_0388  isopropylmalate isomerase large subunit  73 
 
 
468 aa  702  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0620  isopropylmalate isomerase large subunit  95.49 
 
 
466 aa  913  Enterobacter sp. 638  Bacteria  normal  normal  0.135441 
 
 
-
 
NC_009438  Sputcn32_0473  isopropylmalate isomerase large subunit  72.84 
 
 
474 aa  704  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2067  isopropylmalate isomerase large subunit  82.54 
 
 
467 aa  770  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0337  isopropylmalate isomerase large subunit  73.87 
 
 
470 aa  700  Shewanella amazonensis SB2B  Bacteria  normal  0.301995  normal  0.508758 
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  67.74 
 
 
469 aa  642  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_008577  Shewana3_3759  isopropylmalate isomerase large subunit  73.59 
 
 
474 aa  702  Shewanella sp. ANA-3  Bacteria  normal  normal  0.134544 
 
 
-
 
NC_012912  Dd1591_0592  3-isopropylmalate dehydratase, large subunit  86.91 
 
 
466 aa  826  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3609  isopropylmalate isomerase large subunit  87.1 
 
 
466 aa  830  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3818  isopropylmalate isomerase large subunit  71.15 
 
 
470 aa  677  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0370  isopropylmalate isomerase large subunit  73.48 
 
 
474 aa  699  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3586  isopropylmalate isomerase large subunit  73.59 
 
 
474 aa  703  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0390  isopropylmalate isomerase large subunit  74.52 
 
 
469 aa  713  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001658  3-isopropylmalate dehydratase large subunit  80.86 
 
 
466 aa  773  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  94.64 
 
 
466 aa  905  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
NC_010658  SbBS512_E0066  isopropylmalate isomerase large subunit  100 
 
 
466 aa  966  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  94.85 
 
 
466 aa  907  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4234  isopropylmalate isomerase large subunit  73.59 
 
 
474 aa  702  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  67.74 
 
 
469 aa  642  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_003910  CPS_4210  isopropylmalate isomerase large subunit  67.17 
 
 
471 aa  662  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03087  isopropylmalate isomerase large subunit  69.31 
 
 
466 aa  664  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0127  isopropylmalate isomerase large subunit  94.85 
 
 
466 aa  907  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.03719 
 
 
-
 
NC_011312  VSAL_I0375  isopropylmalate isomerase large subunit  78.88 
 
 
471 aa  756  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  94.85 
 
 
466 aa  907  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  94.64 
 
 
466 aa  905  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_007947  Mfla_1705  isopropylmalate isomerase large subunit  66.88 
 
 
468 aa  640  Methylobacillus flagellatus KT  Bacteria  normal  0.0785429  hitchhiker  0.00273209 
 
 
-
 
CP001637  EcDH1_3526  3-isopropylmalate dehydratase, large subunit  100 
 
 
466 aa  966  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00074  isopropylmalate isomerase large subunit  100 
 
 
466 aa  966  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  66.03 
 
 
473 aa  633  1e-180  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  65.59 
 
 
477 aa  634  1e-180  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0947  isopropylmalate isomerase large subunit  67.1 
 
 
469 aa  632  1e-180  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  66.67 
 
 
472 aa  628  1e-179  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0863  isopropylmalate isomerase large subunit  67.1 
 
 
475 aa  629  1e-179  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3270  isopropylmalate isomerase large subunit  66.45 
 
 
468 aa  624  1e-178  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3059  isopropylmalate isomerase large subunit  66.45 
 
 
469 aa  625  1e-178  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0764  isopropylmalate isomerase large subunit  65.38 
 
 
469 aa  625  1e-178  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  66.67 
 
 
475 aa  626  1e-178  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_011894  Mnod_1416  isopropylmalate isomerase large subunit  67.46 
 
 
470 aa  622  1e-177  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.941586  n/a   
 
 
-
 
NC_008254  Meso_3448  isopropylmalate isomerase large subunit  66.45 
 
 
469 aa  623  1e-177  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1245  isopropylmalate isomerase large subunit  66.16 
 
 
470 aa  620  1e-176  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.923179  n/a   
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  65.08 
 
 
470 aa  617  1e-175  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4084  isopropylmalate isomerase large subunit  66.02 
 
 
469 aa  615  1e-175  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.774814  normal 
 
 
-
 
NC_010531  Pnec_1057  isopropylmalate isomerase large subunit  64.1 
 
 
469 aa  616  1e-175  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.960077  normal  0.219462 
 
 
-
 
NC_007333  Tfu_0626  isopropylmalate isomerase large subunit  65.22 
 
 
465 aa  616  1e-175  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3759  isopropylmalate isomerase large subunit  66.02 
 
 
469 aa  617  1e-175  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0819  isopropylmalate isomerase large subunit  66.23 
 
 
470 aa  615  1e-175  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2314  isopropylmalate isomerase large subunit  64.96 
 
 
469 aa  617  1e-175  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2475  isopropylmalate isomerase large subunit  65.38 
 
 
469 aa  614  1e-174  Cupriavidus metallidurans CH34  Bacteria  normal  0.891959  normal  0.311686 
 
 
-
 
NC_002977  MCA2065  isopropylmalate isomerase large subunit  65.94 
 
 
470 aa  611  1e-174  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4223  isopropylmalate isomerase large subunit  66.24 
 
 
469 aa  614  1e-174  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  64.86 
 
 
469 aa  614  1e-174  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3463  3-isopropylmalate dehydratase, large subunit  65.36 
 
 
465 aa  612  1e-174  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0762821  n/a   
 
 
-
 
NC_011365  Gdia_3280  isopropylmalate isomerase large subunit  64.44 
 
 
467 aa  610  1e-173  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.215534  normal 
 
 
-
 
NC_009439  Pmen_2723  isopropylmalate isomerase large subunit  65.03 
 
 
475 aa  608  1e-173  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00243563  normal  0.0720472 
 
 
-
 
NC_013235  Namu_1478  3-isopropylmalate dehydratase, large subunit  62.77 
 
 
486 aa  608  1e-173  Nakamurella multipartita DSM 44233  Bacteria  normal  0.333411  normal  0.827202 
 
 
-
 
NC_012560  Avin_34280  isopropylmalate isomerase large subunit  65.88 
 
 
474 aa  610  1e-173  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1821  isopropylmalate isomerase large subunit  63.68 
 
 
469 aa  608  1e-173  Ralstonia pickettii 12D  Bacteria  normal  0.626663  normal  0.539563 
 
 
-
 
NC_007404  Tbd_1922  isopropylmalate isomerase large subunit  64.87 
 
 
467 aa  610  1e-173  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0778  isopropylmalate isomerase large subunit  63.25 
 
 
479 aa  604  1e-172  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000809283  n/a   
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  65.07 
 
 
473 aa  607  1e-172  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_007650  BTH_II0672  isopropylmalate isomerase large subunit  63.68 
 
 
469 aa  605  1e-172  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00206744  n/a   
 
 
-
 
NC_008686  Pden_2520  isopropylmalate isomerase large subunit  66.02 
 
 
478 aa  604  1e-172  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2785  isopropylmalate isomerase large subunit  64.58 
 
 
468 aa  605  1e-172  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.378068  normal 
 
 
-
 
NC_009380  Strop_1258  isopropylmalate isomerase large subunit  63.68 
 
 
481 aa  607  1e-172  Salinispora tropica CNB-440  Bacteria  normal  0.55744  normal  0.382246 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  62.28 
 
 
471 aa  607  1e-172  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_0764  isopropylmalate isomerase large subunit  65.29 
 
 
470 aa  603  1e-171  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.266094 
 
 
-
 
NC_009078  BURPS1106A_A2316  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  604  1e-171  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11100  3-isopropylmalate dehydratase, large subunit  63.56 
 
 
479 aa  602  1e-171  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2454  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  604  1e-171  Burkholderia pseudomallei 668  Bacteria  normal  0.0296584  n/a   
 
 
-
 
NC_008835  BMA10229_1849  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  603  1e-171  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0604506  n/a   
 
 
-
 
NC_009079  BMA10247_A0520  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  603  1e-171  Burkholderia mallei NCTC 10247  Bacteria  normal  0.643053  n/a   
 
 
-
 
NC_010725  Mpop_4879  isopropylmalate isomerase large subunit  64.01 
 
 
469 aa  603  1e-171  Methylobacterium populi BJ001  Bacteria  normal  0.29662  normal  0.101077 
 
 
-
 
NC_010172  Mext_4355  isopropylmalate isomerase large subunit  64.44 
 
 
480 aa  604  1e-171  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2145  isopropylmalate isomerase large subunit  63.03 
 
 
469 aa  602  1e-171  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6850  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  601  1e-171  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.670748 
 
 
-
 
NC_011757  Mchl_4757  isopropylmalate isomerase large subunit  64.44 
 
 
469 aa  604  1e-171  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_23750  isopropylmalate isomerase large subunit  63.11 
 
 
474 aa  602  1e-171  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0168844 
 
 
-
 
NC_006349  BMAA1729  isopropylmalate isomerase large subunit  63.25 
 
 
469 aa  603  1e-171  Burkholderia mallei ATCC 23344  Bacteria  normal  0.405505  n/a   
 
 
-
 
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