More than 300 homologs were found in PanDaTox collection
for query gene YPK_3537 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_00074  isopropylmalate isomerase large subunit  85.81 
 
 
466 aa  825    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3526  3-isopropylmalate dehydratase, large subunit  85.81 
 
 
466 aa  825    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0375  isopropylmalate isomerase large subunit  77.52 
 
 
471 aa  753    Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4210  isopropylmalate isomerase large subunit  68.23 
 
 
471 aa  683    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  100 
 
 
476 aa  985    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4234  isopropylmalate isomerase large subunit  73.59 
 
 
474 aa  701    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  85.99 
 
 
466 aa  825    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_011138  MADE_03087  isopropylmalate isomerase large subunit  68.25 
 
 
466 aa  653    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0620  isopropylmalate isomerase large subunit  85.78 
 
 
466 aa  820    Enterobacter sp. 638  Bacteria  normal  normal  0.135441 
 
 
-
 
NC_012912  Dd1591_0592  3-isopropylmalate dehydratase, large subunit  91.59 
 
 
466 aa  877    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0413  isopropylmalate isomerase large subunit  72.26 
 
 
468 aa  696    Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000169798 
 
 
-
 
NC_013421  Pecwa_3797  isopropylmalate isomerase large subunit  90.52 
 
 
466 aa  859    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  86.21 
 
 
466 aa  827    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3470  isopropylmalate isomerase large subunit  72.14 
 
 
466 aa  696    Shewanella loihica PV-4  Bacteria  normal  0.510231  normal  0.406012 
 
 
-
 
NC_011353  ECH74115_0079  isopropylmalate isomerase large subunit  85.81 
 
 
466 aa  825    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3609  isopropylmalate isomerase large subunit  89.87 
 
 
466 aa  857    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  64.53 
 
 
472 aa  640    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_009997  Sbal195_0399  isopropylmalate isomerase large subunit  72.47 
 
 
468 aa  697    Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000573464 
 
 
-
 
NC_009665  Shew185_0387  isopropylmalate isomerase large subunit  72.47 
 
 
468 aa  697    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0077  isopropylmalate isomerase large subunit  85.59 
 
 
466 aa  824    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3585  isopropylmalate isomerase large subunit  85.59 
 
 
466 aa  824    Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000478946 
 
 
-
 
NC_009801  EcE24377A_0075  isopropylmalate isomerase large subunit  85.59 
 
 
466 aa  821    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0066  isopropylmalate isomerase large subunit  85.81 
 
 
466 aa  825    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0127  isopropylmalate isomerase large subunit  86.21 
 
 
466 aa  827    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.03719 
 
 
-
 
NC_013456  VEA_001658  3-isopropylmalate dehydratase large subunit  78.62 
 
 
466 aa  756    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0336  isopropylmalate isomerase large subunit  70.82 
 
 
482 aa  689    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0077  isopropylmalate isomerase large subunit  85.81 
 
 
466 aa  825    Escherichia coli SMS-3-5  Bacteria  normal  normal  0.387894 
 
 
-
 
NC_009052  Sbal_0388  isopropylmalate isomerase large subunit  72.04 
 
 
468 aa  696    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  85.99 
 
 
466 aa  825    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
NC_009831  Ssed_0395  isopropylmalate isomerase large subunit  72.14 
 
 
466 aa  690    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000243407 
 
 
-
 
NC_009901  Spea_3826  isopropylmalate isomerase large subunit  70.84 
 
 
466 aa  680    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  100 
 
 
476 aa  985    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  86.21 
 
 
466 aa  827    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3270  isopropylmalate isomerase large subunit  67.88 
 
 
468 aa  640    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4548  isopropylmalate isomerase large subunit  70.84 
 
 
466 aa  682    Shewanella woodyi ATCC 51908  Bacteria  normal  0.182173  normal  0.0136159 
 
 
-
 
NC_008309  HS_0390  isopropylmalate isomerase large subunit  73.33 
 
 
469 aa  708    Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3586  isopropylmalate isomerase large subunit  72.22 
 
 
474 aa  700    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0370  isopropylmalate isomerase large subunit  72.61 
 
 
474 aa  692    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3818  isopropylmalate isomerase large subunit  71.86 
 
 
470 aa  691    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0473  isopropylmalate isomerase large subunit  72.14 
 
 
474 aa  694    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2067  isopropylmalate isomerase large subunit  79.4 
 
 
467 aa  754    Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00073  hypothetical protein  85.81 
 
 
466 aa  825    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0630  3-isopropylmalate dehydratase, large subunit  89.68 
 
 
466 aa  858    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3759  isopropylmalate isomerase large subunit  72.01 
 
 
474 aa  699    Shewanella sp. ANA-3  Bacteria  normal  normal  0.134544 
 
 
-
 
NC_009832  Spro_0743  isopropylmalate isomerase large subunit  91.59 
 
 
466 aa  865    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0337  isopropylmalate isomerase large subunit  73.16 
 
 
470 aa  699    Shewanella amazonensis SB2B  Bacteria  normal  0.301995  normal  0.508758 
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  100 
 
 
476 aa  985    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00815  isopropylmalate isomerase large subunit  78.83 
 
 
466 aa  757    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  64.38 
 
 
477 aa  631  1e-180  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  65.59 
 
 
469 aa  630  1e-179  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  65.59 
 
 
469 aa  630  1e-179  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_011901  Tgr7_1245  isopropylmalate isomerase large subunit  66.88 
 
 
470 aa  627  1e-178  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.923179  n/a   
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  64.74 
 
 
473 aa  624  1e-178  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0947  isopropylmalate isomerase large subunit  65.38 
 
 
469 aa  627  1e-178  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1705  isopropylmalate isomerase large subunit  65.38 
 
 
468 aa  622  1e-177  Methylobacillus flagellatus KT  Bacteria  normal  0.0785429  hitchhiker  0.00273209 
 
 
-
 
NC_012850  Rleg_4084  isopropylmalate isomerase large subunit  64.1 
 
 
469 aa  619  1e-176  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.774814  normal 
 
 
-
 
NC_011369  Rleg2_3759  isopropylmalate isomerase large subunit  63.89 
 
 
469 aa  619  1e-176  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  64.61 
 
 
472 aa  617  1e-175  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3059  isopropylmalate isomerase large subunit  63.52 
 
 
469 aa  615  1e-175  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1922  isopropylmalate isomerase large subunit  65.73 
 
 
467 aa  617  1e-175  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  63.66 
 
 
470 aa  617  1e-175  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4223  isopropylmalate isomerase large subunit  64.59 
 
 
469 aa  613  9.999999999999999e-175  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0863  isopropylmalate isomerase large subunit  64.95 
 
 
475 aa  611  9.999999999999999e-175  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3448  isopropylmalate isomerase large subunit  64.15 
 
 
469 aa  613  9.999999999999999e-175  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2065  isopropylmalate isomerase large subunit  64.36 
 
 
470 aa  608  1e-173  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  64.07 
 
 
469 aa  611  1e-173  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009379  Pnuc_0764  isopropylmalate isomerase large subunit  63.89 
 
 
469 aa  609  1e-173  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2145  isopropylmalate isomerase large subunit  63.68 
 
 
469 aa  608  1e-173  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1921  isopropylmalate isomerase large subunit  64.24 
 
 
469 aa  608  1e-173  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.724454  n/a   
 
 
-
 
NC_008463  PA14_23750  isopropylmalate isomerase large subunit  64.33 
 
 
474 aa  610  1e-173  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0168844 
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  64.73 
 
 
475 aa  610  1e-173  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_009656  PSPA7_2012  isopropylmalate isomerase large subunit  64.33 
 
 
474 aa  610  1e-173  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0300931  n/a   
 
 
-
 
NC_007347  Reut_A2314  isopropylmalate isomerase large subunit  64.03 
 
 
469 aa  607  9.999999999999999e-173  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2133  isopropylmalate isomerase large subunit  63.38 
 
 
469 aa  605  9.999999999999999e-173  Burkholderia sp. 383  Bacteria  normal  normal  0.0241304 
 
 
-
 
NC_010086  Bmul_4630  isopropylmalate isomerase large subunit  63.38 
 
 
477 aa  605  9.999999999999999e-173  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1821  isopropylmalate isomerase large subunit  63.46 
 
 
469 aa  605  9.999999999999999e-173  Ralstonia pickettii 12D  Bacteria  normal  0.626663  normal  0.539563 
 
 
-
 
NC_007650  BTH_II0672  isopropylmalate isomerase large subunit  63.38 
 
 
469 aa  606  9.999999999999999e-173  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00206744  n/a   
 
 
-
 
NC_008825  Mpe_A2164  isopropylmalate isomerase large subunit  64.32 
 
 
479 aa  607  9.999999999999999e-173  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.170701 
 
 
-
 
NC_008061  Bcen_4418  isopropylmalate isomerase large subunit  63.38 
 
 
469 aa  606  9.999999999999999e-173  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3949  isopropylmalate isomerase large subunit  63.38 
 
 
469 aa  606  9.999999999999999e-173  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.373197 
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  63.68 
 
 
473 aa  607  9.999999999999999e-173  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_010515  Bcenmc03_3579  isopropylmalate isomerase large subunit  63.38 
 
 
469 aa  606  9.999999999999999e-173  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.482085  normal  0.399315 
 
 
-
 
NC_010501  PputW619_1548  isopropylmalate isomerase large subunit  65.6 
 
 
477 aa  603  1.0000000000000001e-171  Pseudomonas putida W619  Bacteria  normal  normal  0.272021 
 
 
-
 
NC_003295  RSc1990  isopropylmalate isomerase large subunit  63.6 
 
 
469 aa  603  1.0000000000000001e-171  Ralstonia solanacearum GMI1000  Bacteria  normal  0.508129  normal  0.146532 
 
 
-
 
NC_006349  BMAA1729  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia mallei ATCC 23344  Bacteria  normal  0.405505  n/a   
 
 
-
 
NC_010531  Pnec_1057  isopropylmalate isomerase large subunit  62.82 
 
 
469 aa  602  1.0000000000000001e-171  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.960077  normal  0.219462 
 
 
-
 
NC_007435  BURPS1710b_A0778  isopropylmalate isomerase large subunit  62.96 
 
 
479 aa  603  1.0000000000000001e-171  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000809283  n/a   
 
 
-
 
NC_008835  BMA10229_1849  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0604506  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2316  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2454  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia pseudomallei 668  Bacteria  normal  0.0296584  n/a   
 
 
-
 
NC_007778  RPB_0348  isopropylmalate isomerase large subunit  63.38 
 
 
470 aa  601  1.0000000000000001e-171  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0227  isopropylmalate isomerase large subunit  63.89 
 
 
473 aa  602  1.0000000000000001e-171  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00400027 
 
 
-
 
NC_010552  BamMC406_3844  isopropylmalate isomerase large subunit  62.74 
 
 
469 aa  602  1.0000000000000001e-171  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.777096 
 
 
-
 
NC_007958  RPD_0504  isopropylmalate isomerase large subunit  62.96 
 
 
470 aa  601  1.0000000000000001e-171  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_1641  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia mallei SAVP1  Bacteria  normal  0.159625  n/a   
 
 
-
 
NC_008340  Mlg_1228  isopropylmalate isomerase large subunit  63.42 
 
 
469 aa  604  1.0000000000000001e-171  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0896395 
 
 
-
 
NC_008391  Bamb_3340  isopropylmalate isomerase large subunit  62.74 
 
 
469 aa  602  1.0000000000000001e-171  Burkholderia ambifaria AMMD  Bacteria  normal  0.184073  normal  0.862322 
 
 
-
 
NC_009079  BMA10247_A0520  isopropylmalate isomerase large subunit  62.96 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia mallei NCTC 10247  Bacteria  normal  0.643053  n/a   
 
 
-
 
NC_010623  Bphy_4367  isopropylmalate isomerase large subunit  63.17 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1223  isopropylmalate isomerase large subunit  64.14 
 
 
473 aa  602  1.0000000000000001e-171  Acidovorax citrulli AAC00-1  Bacteria  normal  0.10034  normal  0.0157674 
 
 
-
 
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