| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3818 |
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| Symbol | |
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| ID | 4280709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4553031 |
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| End bp | 4554443 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136639 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_752482 |
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| Protein GI | 114564968 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCAAG TGACAGGTAA AACCTTATAC GAGAAAGTGT GGGACTCACA CATTGTTGCC
AGCCCAGAAG GCGAAGCGCC AGTTGTGTAT GTTGATCGCC ATTTAGTCCA TGAAGTTACC
TCGCCGCAGG CATTTAGTGG TTTAAAAGTG GCAGGTCGTA AGCTACGCGC ACCGCAAAAA
ACCTTTGCTA CCATGGATCA CAATACCTCA ACGCGCAGCG CCAGTTTAGA TGCGTTAAGC
CCAATGGCAC GTACTCAAGT TGAAACACTG GCACAGAATT GTAAAGAATT TGGCGTGCGC
TTATACGATA TTCACCATCC TAATCAAGGT ATTGTTCACG TAATGGGGCC TGAACTGGGT
ATTACCTTAC CCGGTACTGT GATTGTGTGT GGTGATTCTC ATACCGCGAC CCATGGTGCG
TTTGGTGCGT TAGCATTTGG TATTGGCACA TCTGAAGTTG AGCATGTGTT GGCAACCCAG
ACACTACGTC AGTTAAAAGC CAAGAATATG AAAGTTGAAG TGCGTGGCAA AGTAACCGAT
GGCGTGACGG CTAAAGATAT TGTGTTAGCG ATTATCGGTA AGCTAGGCAT GGATGGTGGT
ACAGGATACG TGGTTGAGTT TTGTGGTGAA GCCATTGAAG CATTAACCAT GGAAGGCCGT
ATGACCTTAT GTAATATGGC CATTGAAATG GGCGCTAAAG CTGGCATGGT TGCGCCTGAT
GAAACCACAT TTAACTATCT TAAAGGTCGT GAATTTGCGC CTAAAGATGC AATGTGGGAA
CAAGCTGTTG CAGCATGGTC TGAGCTTAAA TCTGACGCAG ATGCAGTGTT TGATGTCGAA
GTGGTATTAG ATGCCAACGA TATTGCACCG CAGCTAACCT GGGGTACTAA CCCTGGTCAA
GTCGTTGCGA TTGATGGTGT AGTACCTAAT CCAGAAACTG AAACCAACAG TACCAATCGC
ACCAGTATGA TTAAAGCATT AGAGTATATC GGCCTGACGC CGGGCACTAA GATGACTGAC
ATTAGCATTA ATAAAGTGTT TATTGGTTCT TGTACTAACT CGCGTATTGA AGATTTACGA
TCCGCTGCTG TGCACGCTAA AAACCGTAAA GTTGCAGAGG GTGTTGTGGC GATTGTGGTA
CCCGGTTCTG GCCAAGTGAA GTTACAGGCA GAGGAAGAAG GTTTAGATAA AATCTTTATT
GAAGCAGGAT TTGAATGGCG TTTACCAGGT TGCTCGATGT GTTTAGCGAT GAATGATGAC
CGTTTAGACG CTGGCGATCG TTGTGCATCA ACCAGTAATC GTAACTTCGA AGGCCGTCAA
GGTCGGGGTA GTCGAACCCA TTTGGTCAGC CCTGCTATGG CTGCTGCCGC CGCTGTAGCT
GGTCACTTTG TCGATATTCG TAAACCTTAC TAA
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| Protein sequence | MAQVTGKTLY EKVWDSHIVA SPEGEAPVVY VDRHLVHEVT SPQAFSGLKV AGRKLRAPQK
TFATMDHNTS TRSASLDALS PMARTQVETL AQNCKEFGVR LYDIHHPNQG IVHVMGPELG
ITLPGTVIVC GDSHTATHGA FGALAFGIGT SEVEHVLATQ TLRQLKAKNM KVEVRGKVTD
GVTAKDIVLA IIGKLGMDGG TGYVVEFCGE AIEALTMEGR MTLCNMAIEM GAKAGMVAPD
ETTFNYLKGR EFAPKDAMWE QAVAAWSELK SDADAVFDVE VVLDANDIAP QLTWGTNPGQ
VVAIDGVVPN PETETNSTNR TSMIKALEYI GLTPGTKMTD ISINKVFIGS CTNSRIEDLR
SAAVHAKNRK VAEGVVAIVV PGSGQVKLQA EEEGLDKIFI EAGFEWRLPG CSMCLAMNDD
RLDAGDRCAS TSNRNFEGRQ GRGSRTHLVS PAMAAAAAVA GHFVDIRKPY
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