More than 300 homologs were found in PanDaTox collection
for query gene MADE_03087 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010468  EcolC_3585  isopropylmalate isomerase large subunit  69.1 
 
 
466 aa  663    Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000478946 
 
 
-
 
CP001509  ECD_00074  isopropylmalate isomerase large subunit  69.31 
 
 
466 aa  664    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3526  3-isopropylmalate dehydratase, large subunit  69.31 
 
 
466 aa  664    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0413  isopropylmalate isomerase large subunit  67.97 
 
 
468 aa  644    Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000169798 
 
 
-
 
NC_012880  Dd703_0630  3-isopropylmalate dehydratase, large subunit  68.1 
 
 
466 aa  652    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4210  isopropylmalate isomerase large subunit  68.53 
 
 
471 aa  662    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4234  isopropylmalate isomerase large subunit  67.68 
 
 
474 aa  641    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0473  isopropylmalate isomerase large subunit  67.6 
 
 
474 aa  645    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0620  isopropylmalate isomerase large subunit  68.47 
 
 
466 aa  649    Enterobacter sp. 638  Bacteria  normal  normal  0.135441 
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  68.25 
 
 
476 aa  652    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0743  isopropylmalate isomerase large subunit  69.4 
 
 
466 aa  651    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  68.24 
 
 
466 aa  649    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001658  3-isopropylmalate dehydratase large subunit  67.46 
 
 
466 aa  644    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  68.24 
 
 
466 aa  649    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  68.25 
 
 
476 aa  652    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0592  3-isopropylmalate dehydratase, large subunit  68.97 
 
 
466 aa  659    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0388  isopropylmalate isomerase large subunit  67.75 
 
 
468 aa  644    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0079  isopropylmalate isomerase large subunit  69.31 
 
 
466 aa  664    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3470  isopropylmalate isomerase large subunit  67.82 
 
 
466 aa  645    Shewanella loihica PV-4  Bacteria  normal  0.510231  normal  0.406012 
 
 
-
 
NC_009783  VIBHAR_00815  isopropylmalate isomerase large subunit  67.46 
 
 
466 aa  645    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012892  B21_00073  hypothetical protein  69.31 
 
 
466 aa  664    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  68.25 
 
 
476 aa  652    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0127  isopropylmalate isomerase large subunit  68.24 
 
 
466 aa  649    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.03719 
 
 
-
 
NC_012917  PC1_3609  isopropylmalate isomerase large subunit  68.32 
 
 
466 aa  656    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03087  isopropylmalate isomerase large subunit  100 
 
 
466 aa  964    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0077  isopropylmalate isomerase large subunit  69.1 
 
 
466 aa  663    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0075  isopropylmalate isomerase large subunit  69.1 
 
 
466 aa  660    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3270  isopropylmalate isomerase large subunit  82.33 
 
 
468 aa  780    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0387  isopropylmalate isomerase large subunit  67.75 
 
 
468 aa  644    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3586  isopropylmalate isomerase large subunit  67.68 
 
 
474 aa  644    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0370  isopropylmalate isomerase large subunit  67.54 
 
 
474 aa  640    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3797  isopropylmalate isomerase large subunit  68.1 
 
 
466 aa  652    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  68.24 
 
 
466 aa  649    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  68.24 
 
 
466 aa  649    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0077  isopropylmalate isomerase large subunit  69.31 
 
 
466 aa  664    Escherichia coli SMS-3-5  Bacteria  normal  normal  0.387894 
 
 
-
 
NC_010658  SbBS512_E0066  isopropylmalate isomerase large subunit  69.31 
 
 
466 aa  664    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3759  isopropylmalate isomerase large subunit  67.46 
 
 
474 aa  643    Shewanella sp. ANA-3  Bacteria  normal  normal  0.134544 
 
 
-
 
NC_009997  Sbal195_0399  isopropylmalate isomerase large subunit  67.75 
 
 
468 aa  644    Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000573464 
 
 
-
 
NC_008700  Sama_0337  isopropylmalate isomerase large subunit  66.74 
 
 
470 aa  634    Shewanella amazonensis SB2B  Bacteria  normal  0.301995  normal  0.508758 
 
 
-
 
NC_009457  VC0395_A2067  isopropylmalate isomerase large subunit  67.67 
 
 
467 aa  632  1e-180  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0395  isopropylmalate isomerase large subunit  66.52 
 
 
466 aa  631  1e-180  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000243407 
 
 
-
 
NC_011312  VSAL_I0375  isopropylmalate isomerase large subunit  65.88 
 
 
471 aa  632  1e-180  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0336  isopropylmalate isomerase large subunit  66.45 
 
 
482 aa  634  1e-180  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0390  isopropylmalate isomerase large subunit  68.16 
 
 
469 aa  628  1e-179  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3826  isopropylmalate isomerase large subunit  66.09 
 
 
466 aa  627  1e-178  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3818  isopropylmalate isomerase large subunit  65.73 
 
 
470 aa  626  1e-178  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4548  isopropylmalate isomerase large subunit  65.44 
 
 
466 aa  625  1e-178  Shewanella woodyi ATCC 51908  Bacteria  normal  0.182173  normal  0.0136159 
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  62.39 
 
 
477 aa  610  1e-173  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0626  isopropylmalate isomerase large subunit  62.28 
 
 
465 aa  600  1e-170  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3463  3-isopropylmalate dehydratase, large subunit  64.49 
 
 
465 aa  600  1e-170  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0762821  n/a   
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  61.61 
 
 
472 aa  597  1e-169  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_013947  Snas_4999  3-isopropylmalate dehydratase large subunit  61.84 
 
 
470 aa  596  1e-169  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.653294  normal  0.386887 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  61.37 
 
 
471 aa  593  1e-168  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  61.85 
 
 
469 aa  592  1e-168  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_3059  isopropylmalate isomerase large subunit  61.67 
 
 
469 aa  588  1e-167  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  60.55 
 
 
473 aa  590  1e-167  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  62.77 
 
 
473 aa  588  1e-167  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_009667  Oant_0947  isopropylmalate isomerase large subunit  61.29 
 
 
469 aa  586  1e-166  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  61.29 
 
 
469 aa  587  1e-166  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_011989  Avi_4223  isopropylmalate isomerase large subunit  62.58 
 
 
469 aa  585  1e-166  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2802  3-isopropylmalate dehydratase large subunit  62.75 
 
 
462 aa  584  1e-166  Thermobispora bispora DSM 43833  Bacteria  normal  0.0861644  normal  0.228539 
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  61.29 
 
 
469 aa  587  1e-166  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_012793  GWCH70_2591  isopropylmalate isomerase large subunit  62.23 
 
 
471 aa  587  1e-166  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00933091  n/a   
 
 
-
 
NC_011369  Rleg2_3759  isopropylmalate isomerase large subunit  61.67 
 
 
469 aa  582  1.0000000000000001e-165  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4084  isopropylmalate isomerase large subunit  61.88 
 
 
469 aa  583  1.0000000000000001e-165  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.774814  normal 
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  61.64 
 
 
466 aa  584  1.0000000000000001e-165  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_007493  RSP_0863  isopropylmalate isomerase large subunit  63.3 
 
 
475 aa  584  1.0000000000000001e-165  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  62.88 
 
 
475 aa  581  1.0000000000000001e-165  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_009953  Sare_1149  isopropylmalate isomerase large subunit  60.17 
 
 
481 aa  580  1e-164  Salinispora arenicola CNS-205  Bacteria  normal  unclonable  0.0000000597548 
 
 
-
 
NC_007947  Mfla_1705  isopropylmalate isomerase large subunit  61.9 
 
 
468 aa  578  1e-164  Methylobacillus flagellatus KT  Bacteria  normal  0.0785429  hitchhiker  0.00273209 
 
 
-
 
NC_008254  Meso_3448  isopropylmalate isomerase large subunit  61.67 
 
 
469 aa  579  1e-164  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_09060  3-isopropylmalate dehydratase, large subunit  60.34 
 
 
471 aa  580  1e-164  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.918212  normal 
 
 
-
 
NC_009380  Strop_1258  isopropylmalate isomerase large subunit  60.26 
 
 
481 aa  577  1.0000000000000001e-163  Salinispora tropica CNB-440  Bacteria  normal  0.55744  normal  0.382246 
 
 
-
 
NC_013521  Sked_11100  3-isopropylmalate dehydratase, large subunit  60.04 
 
 
479 aa  575  1.0000000000000001e-163  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2316  3-isopropylmalate dehydratase, large subunit  60.65 
 
 
487 aa  573  1.0000000000000001e-162  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000114053 
 
 
-
 
NC_013124  Afer_1534  3-isopropylmalate dehydratase, large subunit  61.67 
 
 
468 aa  573  1.0000000000000001e-162  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.706683  n/a   
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  62.02 
 
 
472 aa  572  1.0000000000000001e-162  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4053  3-isopropylmalate dehydratase, large subunit  59.96 
 
 
474 aa  573  1.0000000000000001e-162  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0216  isopropylmalate isomerase large subunit  60.59 
 
 
480 aa  574  1.0000000000000001e-162  Caulobacter sp. K31  Bacteria  normal  normal  0.146559 
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  61.29 
 
 
470 aa  573  1.0000000000000001e-162  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4227  isopropylmalate isomerase large subunit  59.62 
 
 
481 aa  572  1.0000000000000001e-162  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.888543 
 
 
-
 
NC_008726  Mvan_2135  isopropylmalate isomerase large subunit  59.4 
 
 
481 aa  574  1.0000000000000001e-162  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1565  isopropylmalate isomerase large subunit  61.8 
 
 
472 aa  572  1.0000000000000001e-162  Marinobacter aquaeolei VT8  Bacteria  normal  0.046679  n/a   
 
 
-
 
NC_009439  Pmen_2723  isopropylmalate isomerase large subunit  61.83 
 
 
475 aa  570  1e-161  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00243563  normal  0.0720472 
 
 
-
 
NC_007406  Nwi_2785  isopropylmalate isomerase large subunit  61.34 
 
 
468 aa  570  1e-161  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.378068  normal 
 
 
-
 
NC_012669  Bcav_1573  3-isopropylmalate dehydratase, large subunit  60.04 
 
 
493 aa  568  1e-161  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488131  normal 
 
 
-
 
NC_007778  RPB_0348  isopropylmalate isomerase large subunit  61.12 
 
 
470 aa  569  1e-161  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4355  isopropylmalate isomerase large subunit  59.91 
 
 
480 aa  571  1e-161  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_08740  3-isopropylmalate dehydratase, large subunit  59.28 
 
 
484 aa  571  1e-161  Micrococcus luteus NCTC 2665  Bacteria  decreased coverage  0.000460564  n/a   
 
 
-
 
NC_008146  Mmcs_1921  isopropylmalate isomerase large subunit  59.19 
 
 
481 aa  569  1e-161  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0278  isopropylmalate isomerase large subunit  59.39 
 
 
469 aa  570  1e-161  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1228  isopropylmalate isomerase large subunit  60.73 
 
 
469 aa  568  1e-161  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0896395 
 
 
-
 
NC_010505  Mrad2831_0764  isopropylmalate isomerase large subunit  60.81 
 
 
470 aa  570  1e-161  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.266094 
 
 
-
 
NC_011757  Mchl_4757  isopropylmalate isomerase large subunit  59.91 
 
 
469 aa  571  1e-161  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1967  isopropylmalate isomerase large subunit  59.19 
 
 
481 aa  569  1e-161  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0363  isopropylmalate isomerase large subunit  61.56 
 
 
468 aa  567  1e-160  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.271446  normal  0.532793 
 
 
-
 
NC_007492  Pfl01_1889  isopropylmalate isomerase large subunit  61.88 
 
 
472 aa  565  1e-160  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.169279  normal 
 
 
-
 
NC_009565  TBFG_13003  isopropylmalate isomerase large subunit  59.35 
 
 
473 aa  567  1e-160  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0504  isopropylmalate isomerase large subunit  60.26 
 
 
470 aa  567  1e-160  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0240  isopropylmalate isomerase large subunit  60.48 
 
 
469 aa  565  1e-160  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
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