98 homologs were found in PanDaTox collection
for query gene Vapar_5797 on replicon NC_012792
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012792  Vapar_5797  C4-dicarboxylate transporter/malic acid transport protein  100 
 
 
332 aa  637    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4485  C4-dicarboxylate transporter/malic acid transport protein  54.43 
 
 
331 aa  318  9e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2607  C4-dicarboxylate transporter/malic acid transport protein  57.84 
 
 
329 aa  311  6.999999999999999e-84  Ralstonia eutropha JMP134  Bacteria  normal  0.898363  n/a   
 
 
-
 
NC_011757  Mchl_0156  C4-dicarboxylate transporter/malic acid transport protein  43.09 
 
 
335 aa  198  1.0000000000000001e-49  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.131212  normal  0.103704 
 
 
-
 
NC_010172  Mext_0212  C4-dicarboxylate transporter/malic acid transport protein  43.45 
 
 
335 aa  197  2.0000000000000003e-49  Methylobacterium extorquens PA1  Bacteria  normal  0.187317  normal 
 
 
-
 
NC_008599  CFF8240_0914  C4-dicarboxylate transporter/malic acid transport protein  35.44 
 
 
357 aa  193  4e-48  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.120937  n/a   
 
 
-
 
NC_013132  Cpin_0140  C4-dicarboxylate transporter/malic acid transport protein  40 
 
 
322 aa  186  4e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0712  C4-dicarboxylate transporter/malic acid transport protein  44.01 
 
 
335 aa  181  2e-44  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1964  C4-dicarboxylate transporter/malic acid transport protein  33.23 
 
 
341 aa  157  2e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.449611  normal 
 
 
-
 
NC_009523  RoseRS_2285  C4-dicarboxylate transporter/malic acid transport protein  35 
 
 
342 aa  150  2e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0251  C4-dicarboxylate transporter/malic acid transport protein  35.11 
 
 
320 aa  149  6e-35  Halorhodospira halophila SL1  Bacteria  normal  0.448542  n/a   
 
 
-
 
NC_013512  Sdel_2052  C4-dicarboxylate transporter/malic acid transport protein  32.9 
 
 
322 aa  149  9e-35  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1002  C4-dicarboxylate transporter/malic acid transport protein  29.62 
 
 
326 aa  145  1e-33  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0767  C4-dicarboxylate transporter/malic acid transport protein  32.24 
 
 
320 aa  144  2e-33  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000262712  n/a   
 
 
-
 
NC_008740  Maqu_0374  C4-dicarboxylate transporter/malic acid transport protein  35.82 
 
 
321 aa  143  5e-33  Marinobacter aquaeolei VT8  Bacteria  normal  0.273821  n/a   
 
 
-
 
NC_010803  Clim_1428  C4-dicarboxylate transporter/malic acid transport protein  29.72 
 
 
326 aa  140  1.9999999999999998e-32  Chlorobium limicola DSM 245  Bacteria  normal  0.648837  n/a   
 
 
-
 
NC_008340  Mlg_1275  C4-dicarboxylate transporter/malic acid transport protein  35.85 
 
 
323 aa  140  3.9999999999999997e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.360246  normal 
 
 
-
 
NC_008576  Mmc1_3048  C4-dicarboxylate transporter/malic acid transport protein  35.99 
 
 
317 aa  128  2.0000000000000002e-28  Magnetococcus sp. MC-1  Bacteria  normal  0.015638  normal  0.0398441 
 
 
-
 
NC_010831  Cphamn1_1488  C4-dicarboxylate transporter/malic acid transport protein  30.82 
 
 
326 aa  126  6e-28  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.138957  normal 
 
 
-
 
NC_013422  Hneap_0262  C4-dicarboxylate transporter/malic acid transport protein  27.76 
 
 
326 aa  124  2e-27  Halothiobacillus neapolitanus c2  Bacteria  normal  0.490453  n/a   
 
 
-
 
NC_011059  Paes_1250  C4-dicarboxylate transporter/malic acid transport protein  29.43 
 
 
339 aa  124  3e-27  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.618998 
 
 
-
 
NC_007512  Plut_1129  hypothetical protein  29.25 
 
 
319 aa  120  4.9999999999999996e-26  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.392621 
 
 
-
 
NC_007802  Jann_2959  C4-dicarboxylate transporter/malic acid transport protein  32.82 
 
 
315 aa  116  5e-25  Jannaschia sp. CCS1  Bacteria  normal  0.465608  normal  0.0266391 
 
 
-
 
NC_009715  CCV52592_1491  putative mvin protein  31.34 
 
 
324 aa  110  3e-23  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2391  C4-dicarboxylate transporter/malic acid transport protein  31.83 
 
 
324 aa  106  5e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.482624  normal  0.310248 
 
 
-
 
NC_009952  Dshi_2524  putative C4-dicarboxylate transporter / malic acid transport protein  33.75 
 
 
325 aa  105  1e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0724806 
 
 
-
 
NC_010676  Bphyt_4011  potassium-tellurite ethidium and proflavin transporter  30.99 
 
 
338 aa  103  4e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011758  Mchl_5718  C4-dicarboxylate transporter/malic acid transport protein  29.17 
 
 
385 aa  99.4  7e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.722941 
 
 
-
 
NC_009832  Spro_2458  potassium-tellurite ethidium and proflavin transporter  29.64 
 
 
327 aa  90.9  3e-17  Serratia proteamaculans 568  Bacteria  normal  0.692661  normal 
 
 
-
 
NC_007952  Bxe_B0482  potassium-tellurite ethidium and proflavin transporter  30.45 
 
 
340 aa  89  1e-16  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4679  potassium-tellurite ethidium and proflavin transporter  30.91 
 
 
342 aa  82  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1679  C4-dicarboxylate transporter/malic acid transport protein  28.43 
 
 
330 aa  81.6  0.00000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0920499  n/a   
 
 
-
 
NC_012912  Dd1591_2116  potassium-tellurite ethidium and proflavin transporter  24.52 
 
 
322 aa  79.3  0.00000000000008  Dickeya zeae Ech1591  Bacteria  normal  0.347737  n/a   
 
 
-
 
NC_008782  Ajs_1367  potassium-tellurite ethidium and proflavin transporter  29.18 
 
 
325 aa  79  0.0000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013158  Huta_1807  C4-dicarboxylate transporter/malic acid transport protein  27.42 
 
 
373 aa  77.8  0.0000000000003  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2034  potassium-tellurite ethidium and proflavin transporter  26.13 
 
 
330 aa  76.3  0.0000000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00204759  hitchhiker  5.87722e-19 
 
 
-
 
NC_010511  M446_2043  potassium-tellurite ethidium and proflavin transporter  31.52 
 
 
331 aa  76.6  0.0000000000006  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00031135 
 
 
-
 
NC_010658  SbBS512_E1656  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  75.9  0.0000000000009  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1607  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  75.1  0.000000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1510  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1746  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000864633  hitchhiker  4.635829999999999e-20 
 
 
-
 
NC_010468  EcolC_2231  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.360309 
 
 
-
 
CP001637  EcDH1_2218  C4-dicarboxylate transporter/malic acid transport protein  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01386  potassium-tellurite ethidium and proflavin transporter  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01397  hypothetical protein  25.81 
 
 
330 aa  74.7  0.000000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1559  C4-dicarboxylate transporter/malic acid transport protein  29.2 
 
 
329 aa  73.2  0.000000000006  Shewanella sp. ANA-3  Bacteria  normal  normal  0.239872 
 
 
-
 
NC_004347  SO_2906  hypothetical protein  28.34 
 
 
332 aa  72.8  0.000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_1974  potassium-tellurite ethidium and proflavin transporter  25.16 
 
 
334 aa  72  0.00000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1717  C4-dicarboxylate transporter/malic acid transport protein  24.91 
 
 
322 aa  70.5  0.00000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000810038 
 
 
-
 
NC_007298  Daro_0680  C4-dicarboxylate transporter/malic acid transport protein  26.02 
 
 
346 aa  70.5  0.00000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0679  putative C4-dicarboxylate/malic acid transport protein  26.67 
 
 
329 aa  70.1  0.00000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0950356  n/a   
 
 
-
 
NC_009665  Shew185_2687  C4-dicarboxylate transporter/malic acid transport protein  26.1 
 
 
332 aa  68.6  0.0000000001  Shewanella baltica OS185  Bacteria  normal  0.123467  n/a   
 
 
-
 
NC_010506  Swoo_2874  C4-dicarboxylate transporter/malic acid transport protein  26.91 
 
 
322 aa  68.6  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0144876 
 
 
-
 
NC_011663  Sbal223_1697  C4-dicarboxylate transporter/malic acid transport protein  26.1 
 
 
332 aa  68.6  0.0000000001  Shewanella baltica OS223  Bacteria  normal  0.536393  hitchhiker  0.000152947 
 
 
-
 
NC_009052  Sbal_2665  C4-dicarboxylate transporter/malic acid transport protein  26.1 
 
 
332 aa  68.6  0.0000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1787  potassium-tellurite ethidium and proflavin transporter  26.6 
 
 
337 aa  67.8  0.0000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.25988  normal 
 
 
-
 
NC_011080  SNSL254_A1723  potassium-tellurite ethidium and proflavin transporter  26.6 
 
 
337 aa  68.2  0.0000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1498  C4-dicarboxylate transporter/malic acid transport protein  28.15 
 
 
329 aa  67.4  0.0000000003  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00475764 
 
 
-
 
NC_008322  Shewmr7_1565  C4-dicarboxylate transporter/malic acid transport protein  28.78 
 
 
329 aa  67.8  0.0000000003  Shewanella sp. MR-7  Bacteria  normal  normal  0.0625081 
 
 
-
 
NC_009438  Sputcn32_2372  C4-dicarboxylate transporter/malic acid transport protein  28.3 
 
 
334 aa  67.8  0.0000000003  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1906  hypothetical protein  26.43 
 
 
322 aa  67  0.0000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2766  C4-dicarboxylate transporter/malic acid transport protein  25.74 
 
 
332 aa  66.2  0.0000000007  Shewanella baltica OS195  Bacteria  normal  normal  0.0195102 
 
 
-
 
NC_010524  Lcho_3788  C4-dicarboxylate transporter/malic acid transport protein  32.02 
 
 
338 aa  66.2  0.0000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008345  Sfri_0784  C4-dicarboxylate transporter/malic acid transport protein  24.82 
 
 
322 aa  65.9  0.0000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1733  potassium-tellurite ethidium and proflavin transporter  26.24 
 
 
337 aa  65.5  0.000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.933119 
 
 
-
 
NC_011149  SeAg_B1552  potassium-tellurite ethidium and proflavin transporter  26.95 
 
 
337 aa  65.1  0.000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1726  potassium-tellurite ethidium and proflavin transporter  26.24 
 
 
337 aa  65.5  0.000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.140642  normal 
 
 
-
 
NC_009092  Shew_2530  C4-dicarboxylate transporter/malic acid transport protein  24.46 
 
 
323 aa  62.4  0.00000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03304  hypothetical protein  25.54 
 
 
324 aa  60.5  0.00000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002682  tellurite resistance protein  24.73 
 
 
324 aa  59.7  0.00000006  Vibrio sp. Ex25  Bacteria  normal  0.0518365  n/a   
 
 
-
 
NC_007005  Psyr_1479  C4-dicarboxylate transporter/malic acid transport protein  25.84 
 
 
389 aa  58.9  0.0000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.805909  normal 
 
 
-
 
NC_008010  Dgeo_2839  C4-dicarboxylate transporter/malic acid transport protein  27.22 
 
 
378 aa  57.8  0.0000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4613  C4-dicarboxylate transporter/malic acid transport protein  25.84 
 
 
389 aa  57  0.0000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.522364  n/a   
 
 
-
 
NC_013216  Dtox_3375  C4-dicarboxylate transporter/malic acid transport protein  20.46 
 
 
353 aa  57  0.0000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.646539  normal 
 
 
-
 
NC_013947  Snas_5153  C4-dicarboxylate transporter/malic acid transport protein  24.58 
 
 
435 aa  55.8  0.000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2914  C4-dicarboxylate transporter/malic acid transport protein  25.07 
 
 
369 aa  54.7  0.000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1504  hypothetical protein  27.75 
 
 
336 aa  54.3  0.000003  Shewanella amazonensis SB2B  Bacteria  normal  0.34521  normal 
 
 
-
 
NC_003910  CPS_3436  C4-dicarboxylate transporter/malic acid transport protein  23.62 
 
 
375 aa  54.3  0.000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1960  C4-dicarboxylate transporter/malic acid transport protein  22.86 
 
 
313 aa  52.8  0.000008  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2472  C4-dicarboxylate transporter/malic acid transport protein  25.35 
 
 
419 aa  51.2  0.00002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
BN001306  ANIA_09133  malate permease (Eurofung)  25 
 
 
361 aa  51.6  0.00002  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.0625395  normal  0.622615 
 
 
-
 
NC_007650  BTH_II1616  C4-dicarboxylate transporter/malic acid transport protein, putative  24.67 
 
 
381 aa  50.4  0.00004  Burkholderia thailandensis E264  Bacteria  normal  0.195431  n/a   
 
 
-
 
NC_008261  CPF_0126  C4-dicarboxylate transporter family protein  21.6 
 
 
338 aa  50.1  0.00005  Clostridium perfringens ATCC 13124  Bacteria  normal  0.307461  n/a   
 
 
-
 
NC_008262  CPR_0123  C4-dicarboxylate transporter  21.6 
 
 
338 aa  50.1  0.00005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2282  C4-dicarboxylate transporter/malic acid transport protein  24.64 
 
 
404 aa  49.3  0.00009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.522283 
 
 
-
 
NC_009901  Spea_1117  C4-dicarboxylate transporter/malic acid transport protein  24.93 
 
 
385 aa  49.3  0.0001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1047  C4-dicarboxylate transporter/malic acid transport protein  24.57 
 
 
387 aa  48.9  0.0001  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000000000418188  n/a   
 
 
-
 
NC_011761  AFE_0041  C4-dicarboxylate transporter/malic acid transport protein  24.36 
 
 
385 aa  48.1  0.0002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.299856  n/a   
 
 
-
 
NC_011206  Lferr_0042  C4-dicarboxylate transporter/malic acid transport protein  24.36 
 
 
402 aa  48.5  0.0002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.120445  normal 
 
 
-
 
NC_013946  Mrub_2878  C4-dicarboxylate transporter/malic acid transport protein  29.55 
 
 
356 aa  48.5  0.0002  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2212  C4-dicarboxylate transporter/malic acid transport protein  25.13 
 
 
347 aa  46.6  0.0005  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000186594  n/a   
 
 
-
 
NC_011761  AFE_1992  C4-dicarboxylate transporter/malic acid transport protein  25 
 
 
400 aa  45.1  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1661  C4-dicarboxylate transporter/malic acid transport protein  25 
 
 
400 aa  45.1  0.002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.431835 
 
 
-
 
NC_014158  Tpau_2094  C4-dicarboxylate transporter/malic acid transport protein  26.72 
 
 
395 aa  45.1  0.002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.113103  n/a   
 
 
-
 
NC_008726  Mvan_4384  C4-dicarboxylate transporter/malic acid transport protein  24.93 
 
 
374 aa  43.9  0.004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3313  C4-dicarboxylate transporter/malic acid transport protein  24.59 
 
 
386 aa  43.9  0.004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.43165 
 
 
-
 
NC_013457  VEA_000479  tellurite resistance protein  25.87 
 
 
315 aa  43.5  0.005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1664  C4-dicarboxylate transporter/malic acid transport protein  23.64 
 
 
383 aa  43.5  0.005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.537362  normal  0.0255572 
 
 
-
 
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