| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5797 |
|---|
| Symbol | |
|---|
| ID | 7974918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 499559 |
|---|
| End bp | 500557 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796378 |
|---|
| Product | C4-dicarboxylate transporter/malic acid transport protein |
|---|
| Protein accession | YP_002947652 |
|---|
| Protein GI | 239820467 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1275] Tellurite resistance protein and related permeases |
|---|
| TIGRFAM ID | [TIGR00816] C4-dicarboxylate transporter/malic acid transport protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACG AGTCATTGAA TCCGCCCTTT CCGGTGTTCC ACGCCGCAAG CGAAGCTTCG
CTGCGCAACC TGCCCGTCAA CCTGTTCGGC TCTGTCATGG GGCTTTCGGG GCTGGCCTTG
GCCTGGCGGC TGGCACATGG CAGCCTGGGC GCGCCGGCCG TCATCGGCGA GGCCATCGGC
GCCTTTGCGC TCGGCGTCTT CGTGCTGCTG GCGCTGGGCT ATGCGATGAA GCTGGCCAGG
CATCCGCAGG CCGTGCGCGG AGAGTTCAAT CACCCGGTGA CCGGCAACTT CTTCGGCACC
ATCGTCATCT CGATGCTGCT GCTGTCGGCC GTGATCGCGC CCTACAGTGC GTCCGCCGCG
CACGCGCTGT GGACCCTGGG CGCGATCGCG ACCTTCGTGC TCGGCTTCGT GGTGGTCTCG
CGCCTGCTCA GAGGGCAACT GGATGCATCG CATGCGGTGC CGGCCTGGCT GATCCCTGGC
GTCGCCACGC TGGACATCGC AGTGACCGCC GGGCACGAGC CGTCCATGGC CTGGGCCGCA
GAGCTGAACC TGCTGGCAAT GGCCGTGGGC GCGGTGCTCG CACTGGTGCT GCTCGTGCTC
ATCGTCGGCC GGCTGGTGCA CCAGCCGCCG CTCGCGCCGG CAATGACGCC CTCGCTGATG
ATCCTCGTGG GGCCCTTCGC GGTCGGGTTC CTCGCCTACA CGAACATCAC GGGCAGCATC
GACCGCTTTG CCGCGCTGCT CTTCTACTTC GCGCTCTTCA TGTTCGCGGT GCTTGCGCCG
AAGGTGTTCC GGCCCAGCAT CAATTTCTCC GCGGGATGGT GGGCGATCGG CTTCCCGATG
GCCGCACTGG CCAACGCGGC GCTGAAGTAC GCGCAACTGC GGGCGACCGC GCCGCTGTGG
ACCATCGCGG TCCTGCTGCT CGGGATGCTG ACCGTGGCAC TGGCGGTGCT CACGGTGCGC
ACCCTGCGCA TCGCGTTCAA CGGAAAGCTG TTCACCTGA
|
|---|
| Protein sequence | MQNESLNPPF PVFHAASEAS LRNLPVNLFG SVMGLSGLAL AWRLAHGSLG APAVIGEAIG
AFALGVFVLL ALGYAMKLAR HPQAVRGEFN HPVTGNFFGT IVISMLLLSA VIAPYSASAA
HALWTLGAIA TFVLGFVVVS RLLRGQLDAS HAVPAWLIPG VATLDIAVTA GHEPSMAWAA
ELNLLAMAVG AVLALVLLVL IVGRLVHQPP LAPAMTPSLM ILVGPFAVGF LAYTNITGSI
DRFAALLFYF ALFMFAVLAP KVFRPSINFS AGWWAIGFPM AALANAALKY AQLRATAPLW
TIAVLLLGML TVALAVLTVR TLRIAFNGKL FT
|
|---|
| |