| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1117 |
|---|
| Symbol | |
|---|
| ID | 5661516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 1354169 |
|---|
| End bp | 1355326 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641235669 |
|---|
| Product | C4-dicarboxylate transporter/malic acid transport protein |
|---|
| Protein accession | YP_001500979 |
|---|
| Protein GI | 157960945 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1275] Tellurite resistance protein and related permeases |
|---|
| TIGRFAM ID | [TIGR00816] C4-dicarboxylate transporter/malic acid transport protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA ATACTCAAGT CGAGCCCAGT ACAGAACTAA ATCATCCAGA GCCAAATCCA
GAGCTAAGTA CAGAGATAGG GCCAAACTGG TTTGCCTCAG TGATGGGGAC AGGCATCATA
GCTAACGCAG CAGTCGGTTT ACCTCTAGTC GGTAAAGACC TTAGCAGCAT AGGGTTTGTT
ATTTGGTTAC TCGCAGCCTT GATGCTTCTG GCCATGTTAC TGATAAAGAT TATTCAGACG
ATTCTTAAGC CCCATATCAT CAAGCGACAA TTTAATGATC CGGTTATGGC ACAGTTTTTC
GGGGCGCCGC CAATGGCGAT GCTTACGGTG GCAGGAGGAA CTATCTTGTT CGGGCCAGAA
ATCATGGCCT CAGAGACGTC GATAACCATA GCTTGGACAC TGTGGTTTAT TGGTACTCTT
GGCGGGATAG CAACAGCCGT GATTATCACA TTTCGTCTTT TCACCCATTA TAAAATCCGC
AGTGACGCAG CTTTCGGCGG TTGGCTTATG CCCGTCGTCC CACCTATGGT CTCTGCGGCC
ATTGGCGCCA TGTTAATTCC CCATGCGCCA ACTATCGCTA TGCAGCAGAC AATGCTTTAC
GCCTGCTATG CCATGTTTGG CGTTAGCTTA ATGAGCGCCC TCATTATTAT CACCATGATA
TGGAGCCGCT TAGTTCACTC AGGGACGTCA GGAGGAGCAC GAGTCCCCAC GCTATGGATA
ATCTTGGGGC CTTTAGGTCA GTCGATTACC GCGGCGGGGA CCCTAGGGGC TGTAGCAGTG
CTTGTGGTCG ACGAACCGAT CGCCACAAGC ATGAATACCA TGGCTATTCT CTATGGCGTG
CCTATTTGGG GTTTTGCTTT TTTCTGGTCG ATATTAGCAA GCTTACTGAC ATTAAGTGCT
CTGCGCAGGA AAATGCCCTT TGCACTGACT TGGTGGGCGT TTACTTTCCC CGTTGGCACT
TGTGTTACCG GCACAAGCCA GCTGGCAATA CATACTGGGC TGCCCGCCTT TGAGTGGGCA
GCGATTATGT TATTTACCGG CTTAATTTGC GCTTGGATTA TTGCTGCAAT TGGTACTATA
AAAGGCTTGA AAGGCGGCCA TATAATGAAA AATCCAACCA CATCATCCCA TATTGTTTCT
AAGAAAGGTC AGCTTTAG
|
|---|
| Protein sequence | MSDNTQVEPS TELNHPEPNP ELSTEIGPNW FASVMGTGII ANAAVGLPLV GKDLSSIGFV
IWLLAALMLL AMLLIKIIQT ILKPHIIKRQ FNDPVMAQFF GAPPMAMLTV AGGTILFGPE
IMASETSITI AWTLWFIGTL GGIATAVIIT FRLFTHYKIR SDAAFGGWLM PVVPPMVSAA
IGAMLIPHAP TIAMQQTMLY ACYAMFGVSL MSALIIITMI WSRLVHSGTS GGARVPTLWI
ILGPLGQSIT AAGTLGAVAV LVVDEPIATS MNTMAILYGV PIWGFAFFWS ILASLLTLSA
LRRKMPFALT WWAFTFPVGT CVTGTSQLAI HTGLPAFEWA AIMLFTGLIC AWIIAAIGTI
KGLKGGHIMK NPTTSSHIVS KKGQL
|
|---|
| |