57 homologs were found in PanDaTox collection
for query gene Tpau_2094 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_2094  C4-dicarboxylate transporter/malic acid transport protein  100 
 
 
395 aa  764    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.113103  n/a   
 
 
-
 
NC_008537  Arth_4391  C4-dicarboxylate transporter/malic acid transport protein  49.59 
 
 
395 aa  327  3e-88  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5153  C4-dicarboxylate transporter/malic acid transport protein  45.78 
 
 
435 aa  288  2e-76  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4384  C4-dicarboxylate transporter/malic acid transport protein  45.05 
 
 
374 aa  259  4e-68  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2282  C4-dicarboxylate transporter/malic acid transport protein  45.16 
 
 
404 aa  254  2.0000000000000002e-66  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.522283 
 
 
-
 
NC_009901  Spea_1117  C4-dicarboxylate transporter/malic acid transport protein  38.54 
 
 
385 aa  234  2.0000000000000002e-60  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3436  C4-dicarboxylate transporter/malic acid transport protein  40.06 
 
 
375 aa  228  2e-58  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4610  C4-dicarboxylate transporter/malic acid transport protein  42.24 
 
 
374 aa  183  5.0000000000000004e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.174728  n/a   
 
 
-
 
NC_013739  Cwoe_4856  C4-dicarboxylate transporter/malic acid transport protein  44.92 
 
 
363 aa  182  7e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.0594836  normal 
 
 
-
 
NC_011206  Lferr_0042  C4-dicarboxylate transporter/malic acid transport protein  30.16 
 
 
402 aa  127  3e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.120445  normal 
 
 
-
 
NC_011761  AFE_0041  C4-dicarboxylate transporter/malic acid transport protein  30.16 
 
 
385 aa  127  4.0000000000000003e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.299856  n/a   
 
 
-
 
NC_007492  Pfl01_1664  C4-dicarboxylate transporter/malic acid transport protein  28.38 
 
 
383 aa  125  1e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.537362  normal  0.0255572 
 
 
-
 
NC_007650  BTH_II1616  C4-dicarboxylate transporter/malic acid transport protein, putative  28.84 
 
 
381 aa  124  4e-27  Burkholderia thailandensis E264  Bacteria  normal  0.195431  n/a   
 
 
-
 
NC_007005  Psyr_1479  C4-dicarboxylate transporter/malic acid transport protein  28.72 
 
 
389 aa  119  9e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.805909  normal 
 
 
-
 
NC_011206  Lferr_1661  C4-dicarboxylate transporter/malic acid transport protein  28.15 
 
 
400 aa  117  3e-25  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.431835 
 
 
-
 
NC_011761  AFE_1992  C4-dicarboxylate transporter/malic acid transport protein  28.15 
 
 
400 aa  117  3e-25  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2914  C4-dicarboxylate transporter/malic acid transport protein  28.06 
 
 
369 aa  116  6.9999999999999995e-25  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1047  C4-dicarboxylate transporter/malic acid transport protein  25.98 
 
 
387 aa  116  7.999999999999999e-25  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000000000418188  n/a   
 
 
-
 
NC_004578  PSPTO_4613  C4-dicarboxylate transporter/malic acid transport protein  28.32 
 
 
389 aa  116  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.522364  n/a   
 
 
-
 
NC_013216  Dtox_3375  C4-dicarboxylate transporter/malic acid transport protein  26.06 
 
 
353 aa  112  1.0000000000000001e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.646539  normal 
 
 
-
 
NC_009484  Acry_2615  C4-dicarboxylate transporter/malic acid transport protein  32.72 
 
 
429 aa  110  4.0000000000000004e-23  Acidiphilium cryptum JF-5  Bacteria  normal  0.298091  n/a   
 
 
-
 
NC_010581  Bind_2472  C4-dicarboxylate transporter/malic acid transport protein  27.37 
 
 
419 aa  107  4e-22  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0680  C4-dicarboxylate transporter/malic acid transport protein  28.45 
 
 
346 aa  102  2e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4643  C4-dicarboxylate transporter/malic acid transport protein  30.42 
 
 
383 aa  101  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3541  C4-dicarboxylate transporter/malic acid transport protein  27.37 
 
 
386 aa  100  6e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.123279  n/a   
 
 
-
 
NC_007005  Psyr_3313  C4-dicarboxylate transporter/malic acid transport protein  27.61 
 
 
386 aa  98.2  2e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.43165 
 
 
-
 
NC_011666  Msil_3232  C4-dicarboxylate transporter/malic acid transport protein  30.65 
 
 
382 aa  90.1  6e-17  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00415956 
 
 
-
 
BN001306  ANIA_09133  malate permease (Eurofung)  25.14 
 
 
361 aa  87  5e-16  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.0625395  normal  0.622615 
 
 
-
 
NC_009439  Pmen_0457  C4-dicarboxylate transporter/malic acid transport protein  27.93 
 
 
384 aa  79.7  0.00000000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4602  C4-dicarboxylate transporter/malic acid transport protein  31.01 
 
 
357 aa  77.4  0.0000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.681396 
 
 
-
 
NC_012034  Athe_2212  C4-dicarboxylate transporter/malic acid transport protein  22.12 
 
 
347 aa  76.3  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000186594  n/a   
 
 
-
 
NC_008010  Dgeo_2839  C4-dicarboxylate transporter/malic acid transport protein  31.23 
 
 
378 aa  74.7  0.000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0404  C4-dicarboxylate transporter/malic acid transport protein  23.59 
 
 
343 aa  73.9  0.000000000005  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_009043  PICST_30901  predicted protein  22.38 
 
 
433 aa  72  0.00000000002  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal  0.314839 
 
 
-
 
NC_013124  Afer_0433  C4-dicarboxylate transporter/malic acid transport protein  27.95 
 
 
366 aa  71.2  0.00000000003  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009043  PICST_44239  predicted protein  22.78 
 
 
373 aa  70.5  0.00000000005  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal  0.182141 
 
 
-
 
NC_011059  Paes_1250  C4-dicarboxylate transporter/malic acid transport protein  20.7 
 
 
339 aa  61.6  0.00000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.618998 
 
 
-
 
NC_006670  CNA05110  sulfite transporter, putative  23.12 
 
 
517 aa  60.1  0.00000006  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_009767  Rcas_1964  C4-dicarboxylate transporter/malic acid transport protein  22.8 
 
 
341 aa  58.2  0.0000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.449611  normal 
 
 
-
 
NC_007348  Reut_B4485  C4-dicarboxylate transporter/malic acid transport protein  24.89 
 
 
331 aa  57.4  0.0000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_1807  C4-dicarboxylate transporter/malic acid transport protein  26.86 
 
 
373 aa  56.6  0.0000007  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1488  C4-dicarboxylate transporter/malic acid transport protein  20.32 
 
 
326 aa  56.2  0.0000009  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.138957  normal 
 
 
-
 
NC_013422  Hneap_0262  C4-dicarboxylate transporter/malic acid transport protein  21.91 
 
 
326 aa  53.9  0.000005  Halothiobacillus neapolitanus c2  Bacteria  normal  0.490453  n/a   
 
 
-
 
NC_009523  RoseRS_2285  C4-dicarboxylate transporter/malic acid transport protein  21.69 
 
 
342 aa  53.1  0.000009  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
BN001304  ANIA_11016  malic acid transport protein, putative (AFU_orthologue; AFUA_4G09410)  25.2 
 
 
388 aa  52.8  0.00001  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.522177 
 
 
-
 
NC_008740  Maqu_0374  C4-dicarboxylate transporter/malic acid transport protein  20.43 
 
 
321 aa  49.7  0.00009  Marinobacter aquaeolei VT8  Bacteria  normal  0.273821  n/a   
 
 
-
 
NC_008639  Cpha266_1002  C4-dicarboxylate transporter/malic acid transport protein  20 
 
 
326 aa  48.9  0.0001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2607  C4-dicarboxylate transporter/malic acid transport protein  28.26 
 
 
329 aa  48.9  0.0002  Ralstonia eutropha JMP134  Bacteria  normal  0.898363  n/a   
 
 
-
 
NC_010803  Clim_1428  C4-dicarboxylate transporter/malic acid transport protein  20.97 
 
 
326 aa  48.1  0.0003  Chlorobium limicola DSM 245  Bacteria  normal  0.648837  n/a   
 
 
-
 
NC_013172  Bfae_22500  tellurite resistance protein-like permease  30.8 
 
 
357 aa  46.2  0.0009  Brachybacterium faecium DSM 4810  Bacteria  normal  0.675884  n/a   
 
 
-
 
BN001307  ANIA_01472  C4-dicarboxylate transporter/malic acid transport protein, putative (AFU_orthologue; AFUA_8G04630)  21.51 
 
 
395 aa  46.2  0.001  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00510243  normal  0.213682 
 
 
-
 
NC_011830  Dhaf_0897  C4-dicarboxylate transporter/malic acid transport protein  19 
 
 
384 aa  45.1  0.002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0526316  n/a   
 
 
-
 
NC_007575  Suden_0767  C4-dicarboxylate transporter/malic acid transport protein  20 
 
 
320 aa  45.1  0.002  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000262712  n/a   
 
 
-
 
BN001304  ANIA_07797  C4-dicarboxylate transporter/malic acid transport protein, putative (AFU_orthologue; AFUA_2G17660)  23.93 
 
 
375 aa  44.3  0.003  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.0796042 
 
 
-
 
NC_007484  Noc_0077  C4-dicarboxylate transporter/malic acid transport protein  24.78 
 
 
360 aa  44.3  0.004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0784  C4-dicarboxylate transporter/malic acid transport protein  22.22 
 
 
322 aa  43.9  0.006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0251  C4-dicarboxylate transporter/malic acid transport protein  25.42 
 
 
320 aa  43.5  0.007  Halorhodospira halophila SL1  Bacteria  normal  0.448542  n/a   
 
 
-
 
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