| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1717 |
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| Symbol | |
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| ID | 5611593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2062303 |
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| End bp | 2063271 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932587 |
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| Product | C4-dicarboxylate transporter/malic acid transport protein |
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| Protein accession | YP_001473456 |
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| Protein GI | 157374856 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1275] Tellurite resistance protein and related permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000810038 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCCA CTATAACCAA ACTCTCAAAT CACGTATCTC GCCTACCAAC ACCTATGGCT
GGTCTGGCTC TGGCTATCGC CAGTCTCGGC TGGGCATGGG ACAGTATGCT ACCCAATATG
GATGGTCGCG GACAGATCAT AGGCGCCGTT GTCGCAGCGG TACTACTCAT CTCTCTGGTC
GTAAAATTTG TTATTCACCC AAAGATATTA AAAGAAGATC TATCTCATCC CGTAGTGGGC
AGTGTGATCC CAACGTTTGC CATGGGGCTC ATGGTTGTAT CTAATGCTTT AGGACAATAC
TTGCCAGCAC AGGGACGTTA TCTGTGGTTG TTCGCTATCA TGGTCCATAT CCTGTTTTTA
GGCATGTTCA TCTTCTACCG GGCTATCGAC TTCAAGCTGG AACACATGGT ACCAAGCTGG
TTTGTGCCAC CTATCGGTAT CATAGTCGCT GCCGTTAGTT TTCCCGGGAG TCAATATGAA
TGGATCGCGA GCGCAACGCT CAACTTCGGT ATGGCCTGCT ACCTCATCAT GTTGCCGGTC
ATGTTATACA GACTCATATT TTGTGCACCA ATCAGCGACG CTGCCAAACC GACTATAGCT
ATCATGGCGG CGCCTGCCAG TTTATCTTTA GCCGGCTACT TAACTATTAA CAGTAATCCA
TCAATCGTTA TCGTTGCACT GTTACTGAGT ATTGCGGTGT TGATGACCAG TGTCATTTAC
CTGGCCTTCT TTCACCTGAT GAGACTCCCT TTCTCTCCAG GATATGCAGC CTTTACCTTC
CCTATGGTCA TTGGCGCAAC AGCCTTGATT AAAGCGGGTC ACTGGTTAAT TCAAAGCTTC
GGTGAGAGTC AGTTAACAGA TTTAATCGAA CAAGCCGCAA AGGGAGAGTT ATTTATATCA
ACGGCTGTAG TCTTGTATGT CGTATACCGC TACTTGTCAC ATTATAGACC TATGACGCTA
ACGGCTTAA
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| Protein sequence | MKATITKLSN HVSRLPTPMA GLALAIASLG WAWDSMLPNM DGRGQIIGAV VAAVLLISLV
VKFVIHPKIL KEDLSHPVVG SVIPTFAMGL MVVSNALGQY LPAQGRYLWL FAIMVHILFL
GMFIFYRAID FKLEHMVPSW FVPPIGIIVA AVSFPGSQYE WIASATLNFG MACYLIMLPV
MLYRLIFCAP ISDAAKPTIA IMAAPASLSL AGYLTINSNP SIVIVALLLS IAVLMTSVIY
LAFFHLMRLP FSPGYAAFTF PMVIGATALI KAGHWLIQSF GESQLTDLIE QAAKGELFIS
TAVVLYVVYR YLSHYRPMTL TA
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