More than 300 homologs were found in PanDaTox collection
for query gene Tcr_0463 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02160  ribonucleotide-diphosphate reductase alpha subunit  72.91 
 
 
761 aa  1186    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0875  ribonucleotide-diphosphate reductase subunit alpha  72.77 
 
 
761 aa  1189    Vibrio cholerae O395  Bacteria  normal  0.0454664  n/a   
 
 
-
 
CP001637  EcDH1_1425  ribonucleoside-diphosphate reductase, alpha subunit  72.91 
 
 
761 aa  1186    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1313  ribonucleotide-diphosphate reductase subunit alpha  73.33 
 
 
762 aa  1196    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2996  ribonucleotide-diphosphate reductase subunit alpha  74.9 
 
 
754 aa  1181    Marinomonas sp. MWYL1  Bacteria  normal  0.558234  normal 
 
 
-
 
NC_011149  SeAg_B2413  ribonucleotide-diphosphate reductase subunit alpha  73.17 
 
 
761 aa  1191    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1577  ribonucleotide-diphosphate reductase subunit alpha  70.22 
 
 
758 aa  1132    Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.0106565 
 
 
-
 
NC_003910  CPS_2328  ribonucleotide-diphosphate reductase subunit alpha  73.25 
 
 
756 aa  1175    Colwellia psychrerythraea 34H  Bacteria  normal  0.333669  n/a   
 
 
-
 
NC_012917  PC1_1103  ribonucleotide-diphosphate reductase subunit alpha  72.38 
 
 
761 aa  1179    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.649141  n/a   
 
 
-
 
NC_009783  VIBHAR_02733  ribonucleotide-diphosphate reductase subunit alpha  73.53 
 
 
760 aa  1192    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_2415  ribonucleotide-diphosphate reductase subunit alpha  74.18 
 
 
762 aa  1192    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2407  ribonucleotide-diphosphate reductase subunit alpha  73.3 
 
 
762 aa  1186    Shewanella baltica OS195  Bacteria  normal  0.0329855  unclonable  0.0000182182 
 
 
-
 
NC_010506  Swoo_2303  ribonucleotide-diphosphate reductase subunit alpha  73.13 
 
 
762 aa  1176    Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00675695 
 
 
-
 
NC_007204  Psyc_1263  ribonucleotide-diphosphate reductase subunit alpha  71.01 
 
 
758 aa  1143    Psychrobacter arcticus 273-4  Bacteria  normal  0.863588  normal 
 
 
-
 
NC_009831  Ssed_2306  ribonucleotide-diphosphate reductase subunit alpha  73.13 
 
 
762 aa  1181    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000160913 
 
 
-
 
NC_012912  Dd1591_3021  ribonucleotide-diphosphate reductase subunit alpha  72.42 
 
 
762 aa  1183    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2517  ribonucleotide-diphosphate reductase subunit alpha  73.17 
 
 
761 aa  1191    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.299874 
 
 
-
 
NC_009901  Spea_2064  ribonucleotide-diphosphate reductase subunit alpha  73.26 
 
 
762 aa  1187    Shewanella pealeana ATCC 700345  Bacteria  normal  0.709701  n/a   
 
 
-
 
NC_012892  B21_02119  hypothetical protein  72.91 
 
 
761 aa  1186    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2504  ribonucleotide-diphosphate reductase subunit alpha  73.17 
 
 
780 aa  1189    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0463  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
760 aa  1588    Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00000234846  n/a   
 
 
-
 
NC_009665  Shew185_2290  ribonucleotide-diphosphate reductase subunit alpha  73.43 
 
 
762 aa  1187    Shewanella baltica OS185  Bacteria  normal  0.0215742  n/a   
 
 
-
 
NC_010498  EcSMS35_2385  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
761 aa  1184    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2462  ribonucleotide-diphosphate reductase subunit alpha  73.17 
 
 
761 aa  1191    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.059403 
 
 
-
 
NC_010468  EcolC_1417  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
761 aa  1186    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0448641 
 
 
-
 
NC_010158  YpAngola_0034  putative ribonucleoside-diphosphate reductase, alpha subunit  63.46 
 
 
548 aa  689    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1223  ribonucleotide-diphosphate reductase subunit alpha  71.97 
 
 
774 aa  1160    Methylobacillus flagellatus KT  Bacteria  normal  0.4349  normal 
 
 
-
 
NC_011353  ECH74115_3368  ribonucleotide-diphosphate reductase subunit alpha  72.77 
 
 
761 aa  1182    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1037  ribonucleotide-diphosphate reductase subunit alpha  72.94 
 
 
762 aa  1181    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1952  ribonucleotide-diphosphate reductase subunit alpha  72.08 
 
 
762 aa  1167    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1122  ribonucleotide-diphosphate reductase subunit alpha  69.83 
 
 
758 aa  1132    Psychrobacter cryohalolentis K5  Bacteria  normal  0.0415952  normal  0.239593 
 
 
-
 
NC_007984  BCI_0386  ribonucleotide-diphosphate reductase subunit alpha  67.93 
 
 
760 aa  1120    Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2801  ribonucleotide-diphosphate reductase subunit alpha  72.12 
 
 
761 aa  1178    Enterobacter sp. 638  Bacteria  normal  0.768732  normal  0.31743 
 
 
-
 
NC_009832  Spro_3271  ribonucleotide-diphosphate reductase subunit alpha  72.55 
 
 
762 aa  1182    Serratia proteamaculans 568  Bacteria  normal  0.838311  normal 
 
 
-
 
NC_009092  Shew_1946  ribonucleotide-diphosphate reductase subunit alpha  73.66 
 
 
762 aa  1187    Shewanella loihica PV-4  Bacteria  normal  0.726077  normal  0.0192635 
 
 
-
 
NC_011205  SeD_A2621  ribonucleotide-diphosphate reductase subunit alpha  73.17 
 
 
780 aa  1189    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0895131 
 
 
-
 
NC_009801  EcE24377A_2531  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
761 aa  1184    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2473  ribonucleotide-diphosphate reductase subunit alpha  70.91 
 
 
771 aa  1163    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3213  ribonucleotide-diphosphate reductase subunit alpha  72.25 
 
 
761 aa  1176    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003109  ribonucleotide reductase of class Ia (aerobic) alpha subunit  73.79 
 
 
760 aa  1198    Vibrio sp. Ex25  Bacteria  normal  0.810994  n/a   
 
 
-
 
NC_008309  HS_1196  ribonucleotide-diphosphate reductase subunit alpha  73.78 
 
 
756 aa  1178    Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1916  ribonucleotide-diphosphate reductase subunit alpha  74.31 
 
 
762 aa  1194    Shewanella sp. MR-4  Bacteria  normal  0.626262  hitchhiker  0.000000207141 
 
 
-
 
NC_008322  Shewmr7_2062  ribonucleotide-diphosphate reductase subunit alpha  74.18 
 
 
762 aa  1191    Shewanella sp. MR-7  Bacteria  normal  0.0145049  unclonable  0.0000416662 
 
 
-
 
NC_011663  Sbal223_2055  ribonucleotide-diphosphate reductase subunit alpha  73.43 
 
 
762 aa  1186    Shewanella baltica OS223  Bacteria  normal  0.574862  unclonable  0.00000000000417711 
 
 
-
 
NC_008345  Sfri_2133  ribonucleotide-diphosphate reductase subunit alpha  72.21 
 
 
762 aa  1169    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2059  ribonucleotide-diphosphate reductase subunit alpha  73.43 
 
 
762 aa  1187    Shewanella baltica OS155  Bacteria  normal  0.0564291  n/a   
 
 
-
 
NC_011138  MADE_02125  ribonucleotide-diphosphate reductase subunit alpha  72.02 
 
 
773 aa  1159    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.117976  n/a   
 
 
-
 
NC_009438  Sputcn32_2073  ribonucleotide-diphosphate reductase subunit alpha  74.08 
 
 
762 aa  1193    Shewanella putrefaciens CN-32  Bacteria  normal  0.0110634  n/a   
 
 
-
 
NC_009800  EcHS_A2374  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
761 aa  1186    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1769  ribonucleotide-diphosphate reductase subunit alpha  73.1 
 
 
758 aa  1163    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.738921  n/a   
 
 
-
 
NC_008577  Shewana3_1969  ribonucleotide-diphosphate reductase subunit alpha  74.31 
 
 
762 aa  1193    Shewanella sp. ANA-3  Bacteria  normal  0.210427  hitchhiker  0.0000566907 
 
 
-
 
NC_010658  SbBS512_E2614  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
761 aa  1185    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2769  ribonucleotide-diphosphate reductase subunit alpha  73.33 
 
 
762 aa  1196    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1728  ribonucleotide-diphosphate reductase subunit alpha  74.57 
 
 
782 aa  1188    Shewanella amazonensis SB2B  Bacteria  normal  0.742662  normal  0.011326 
 
 
-
 
NC_010465  YPK_2848  ribonucleotide-diphosphate reductase subunit alpha  73.33 
 
 
762 aa  1196    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1112  ribonucleotide-diphosphate reductase subunit alpha  73.54 
 
 
757 aa  1165    Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  29.78 
 
 
772 aa  352  2e-95  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_014150  Bmur_2704  ribonucleoside-diphosphate reductase, alpha subunit  31.56 
 
 
771 aa  347  3e-94  Brachyspira murdochii DSM 12563  Bacteria  normal  0.343813  n/a   
 
 
-
 
NC_009802  CCC13826_1895  ribonucleotide-diphosphate reductase subunit alpha  29.08 
 
 
791 aa  331  3e-89  Campylobacter concisus 13826  Bacteria  normal  0.594858  n/a   
 
 
-
 
NC_013512  Sdel_0054  ribonucleoside-diphosphate reductase, alpha subunit  28.99 
 
 
788 aa  330  4e-89  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1122  ribonucleotide-diphosphate reductase subunit alpha  28.89 
 
 
790 aa  330  5.0000000000000004e-89  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  28.73 
 
 
791 aa  325  2e-87  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  28.66 
 
 
789 aa  319  1e-85  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  28.66 
 
 
789 aa  319  1e-85  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  28.66 
 
 
789 aa  318  2e-85  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1730  ribonucleotide-diphosphate reductase subunit alpha  28.24 
 
 
793 aa  313  4.999999999999999e-84  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0025  ribonucleotide-diphosphate reductase subunit alpha  28.02 
 
 
791 aa  311  2e-83  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_2096  ribonucleotide-diphosphate reductase subunit alpha  27.98 
 
 
788 aa  310  6.999999999999999e-83  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3223  ribonucleotide-diphosphate reductase subunit alpha  28.7 
 
 
764 aa  309  1.0000000000000001e-82  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  29.08 
 
 
842 aa  301  3e-80  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_006687  CNE03330  ribonucleoside-diphosphate reductase large chain, putative  29.91 
 
 
863 aa  299  1e-79  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.279804  n/a   
 
 
-
 
NC_013889  TK90_1442  ribonucleoside-diphosphate reductase, alpha subunit  29.07 
 
 
964 aa  293  7e-78  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3151  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
968 aa  293  1e-77  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.474699 
 
 
-
 
NC_009441  Fjoh_0521  ribonucleoside-diphosphate reductase, alpha subunit  30.16 
 
 
797 aa  291  2e-77  Flavobacterium johnsoniae UW101  Bacteria  normal  0.359224  n/a   
 
 
-
 
NC_008463  PA14_49460  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
963 aa  288  2e-76  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00878086  normal  0.899958 
 
 
-
 
NC_009656  PSPA7_4224  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
963 aa  288  2e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  0.194007  n/a   
 
 
-
 
NC_006368  lpp1738  ribonucleotide-diphosphate reductase subunit alpha  29.24 
 
 
942 aa  288  2.9999999999999996e-76  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1738  ribonucleotide-diphosphate reductase subunit alpha  28.75 
 
 
942 aa  287  4e-76  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_2458  ribonucleotide-diphosphate reductase subunit alpha  28.14 
 
 
969 aa  288  4e-76  Saccharophagus degradans 2-40  Bacteria  normal  0.0127946  normal 
 
 
-
 
NC_011071  Smal_0206  ribonucleoside-diphosphate reductase, alpha subunit  29.21 
 
 
803 aa  285  1.0000000000000001e-75  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.959297 
 
 
-
 
NC_004578  PSPTO_1671  ribonucleoside-diphosphate reductase, alpha subunit  28.3 
 
 
970 aa  286  1.0000000000000001e-75  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2615  ribonucleotide-diphosphate reductase subunit alpha  28.47 
 
 
971 aa  286  1.0000000000000001e-75  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.104389  n/a   
 
 
-
 
NC_007005  Psyr_3717  ribonucleotide-diphosphate reductase subunit alpha  27.75 
 
 
970 aa  285  2.0000000000000002e-75  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0503924 
 
 
-
 
NC_011726  PCC8801_4301  ribonucleoside-diphosphate reductase, alpha subunit  29.63 
 
 
769 aa  285  2.0000000000000002e-75  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4359  ribonucleoside-diphosphate reductase, alpha subunit  29.5 
 
 
769 aa  284  5.000000000000001e-75  Cyanothece sp. PCC 8802  Bacteria  normal  0.746758  normal  0.127314 
 
 
-
 
NC_010322  PputGB1_4236  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
959 aa  282  1e-74  Pseudomonas putida GB-1  Bacteria  normal  0.938732  normal 
 
 
-
 
NC_007492  Pfl01_4246  ribonucleotide-diphosphate reductase subunit alpha  27.81 
 
 
964 aa  283  1e-74  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0250585  normal  0.994007 
 
 
-
 
NC_002947  PP_1179  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
959 aa  281  4e-74  Pseudomonas putida KT2440  Bacteria  normal  0.492267  normal  0.0911019 
 
 
-
 
NC_009512  Pput_1210  ribonucleotide-diphosphate reductase subunit alpha  27.91 
 
 
959 aa  281  4e-74  Pseudomonas putida F1  Bacteria  normal  0.281558  normal  0.710482 
 
 
-
 
NC_009355  OSTLU_48569  predicted protein  29.59 
 
 
817 aa  280  7e-74  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.495234  n/a   
 
 
-
 
NC_010501  PputW619_1192  ribonucleotide-diphosphate reductase subunit alpha  27.78 
 
 
959 aa  280  1e-73  Pseudomonas putida W619  Bacteria  normal  0.159136  normal  0.293014 
 
 
-
 
NC_002620  TC0214  ribonucleotide-diphosphate reductase subunit alpha  29.65 
 
 
1047 aa  278  2e-73  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0436  ribonucleotide-diphosphate reductase subunit alpha  27.66 
 
 
941 aa  277  6e-73  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_0536  hypothetical protein  28.18 
 
 
790 aa  276  7e-73  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_1974  ribonucleoside-diphosphate reductase, alpha subunit  29.01 
 
 
802 aa  276  8e-73  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.150838 
 
 
-
 
NC_013730  Slin_6359  ribonucleoside-diphosphate reductase, alpha subunit  28.61 
 
 
826 aa  276  8e-73  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3267  ribonucleoside-diphosphate reductase, alpha subunit  28.79 
 
 
814 aa  276  8e-73  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  27.05 
 
 
845 aa  276  1.0000000000000001e-72  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1736  ribonucleotide-diphosphate reductase subunit alpha  27.66 
 
 
941 aa  276  1.0000000000000001e-72  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0691  ribonucleoside-diphosphate reductase, alpha subunit  31.75 
 
 
792 aa  276  2.0000000000000002e-72  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0197875  normal 
 
 
-
 
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