| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1916 |
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| Symbol | |
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| ID | 4252490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2282212 |
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| End bp | 2284500 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118527 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_734047 |
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| Protein GI | 113970254 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.626262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000207141 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGCA ATATGACAGT CACAAAACGC TGTGGTGCAC GTGAGACAAT CGATCTCGAC
AAAATACACC GCGTAATTAC TTGGGCAGCC AAGGGATTAA AAAACGTTTC TGTTTCTGAA
GTTGAACTTC GCACGCATTT ACAGTTTTTC GACGGGATCC CAACCGAAGC TATCCACGAA
ACGATCATCA AATCTGCGGC GGATTTAATT TCCCCAGAAT CACCGGATTA TCAGTTTCTG
GCTGCGCGCT TAGCCGTATT CCATTTACGT AAGAAGGCCT TTGGTCAGTT CGAGCCGCCA
AAGTTATACG ACCATGTGAC TAAACTGGTC GAGCTTGGCA AGTATGATAT GCATATTCTG
CAGGATTACA CCCGCGAAGA ACTCGATATC ATGGATACCT ATATCGACCA TTGGCGCGAT
ATGAACTTCT CCTACGCGGC GGTAAAACAG CTCGAAGGTA AGTATCTGGT ACAAAACCGT
GTCACCCACG AGATCTATGA GAGCGCCCAG TTCCTCTATA TTCTGGTGGC GGCCTGCTTG
TTTGCCCGTT ATCCAAAAGA AACGCGCCTA CAATACGTTA AAGATTTTTA CGACGCGGTA
TCGACCTTTA AGATTTCTCT GCCCACGCCA ATCATGGCGG GTGTACGTAC GCCAACGCGT
CAATTCAGTT CATGTGTTCT GATTGAGTGT GGCGACAGCT TAGATTCTAT CAACGCGACC
GCCTCTTCTA TCGTGAAGTA TGTCAGCCAA CGCGCGGGTA TCGGTATCAA CGCCGGTCGT
ATCCGTGCAT TAGGTAGCCC AATCCGCGGC GGCGAAGCCT TCCACACTGG TTGCTTACCT
TTCTACAAGT ATTTCCAAAC GGCGGTGAAG TCTTGCTCGC AAGGCGGCGT TCGTGGTGGT
GCAGCGACCC TCTTCTACCC CATTTGGCAC TTAGAAGTAG AATCGCTGCT GGTACTGAAA
AACAACCGCG GTGTTGAAGA TAACCGTATT CGCCACTTAG ACTACGGCGT GCAGCTCAAC
AAGCTGATGT ATCAACGTCT GATCAAAGGC GAAAACATCA GCCTGTTCAG TCCATCGGAC
GTGCCAGGTC TTTACGATGC CTTCTTCGAA GATCAAGACG AATTCGAACG TCTGTACCTG
CAATATGAGC AAGACAGCAG CATTCGTAAG AAGACATTGA AAGCAGTCGA ACTGTTTTCA
TTAATGATGC AAGAGCGTGC TTCAACAGGC CGTATCTACA TCCAAAACGT TGACCACTGT
AACACCCACA GTCCGTTCGA CTCGAAAGTC GCTCCGATCA GACAATCTAA CCTTTGTCTT
GAAATCGCGT TGCCGACCAA GCCACTGAAC AACATTGACG ATCCGAACGG TGAAATCGCG
CTGTGTACAC TGTCAGCGTT AAACTTAGGT GCGATCAAAA ACTTAGCCGA GCTTGAGCCA
TTAGCCGATT TAGCGGTACG TGCACTGGAT AACCTGCTGG ATTACCAAGA TTATCCAATC
AAAGCGGCTG AAATTTCATC GATGAACCGT CGTACCTTAG GTATTGGTGT TATCAACTTC
GCTAACTACT TAGCGAAGAA TGGCATGAAG TACTCCGATG GTAGCGCGAA CAACCTGACT
CACAAGACCT TTGAAGCGAT TCAATTCTAT CTGCTCAAGG CGTCAATGAA TCTGGCAAAA
GAGCAAGGTG CGTGCCCATT ATTTAATGAG ACCACTTACG CCCAAGGTAT TTTACCTATC
GATACCTACA AACGTGATTT AGATAAAATT TGCAGCGAGC CATTGCATTT AGACTGGGAA
ACACTGCGCC AAGACATCAA ACAGCACGGT TTACGTAACT CGACCCTGTC TGCGCTGATG
CCGTCTGAAA CTTCATCACA GATCTCAAAC GCGACTAACG GTATCGAACC GCCACGCGGT
TTGATCAGTG TCAAAGCCAG TAAAGATGGC CAGTTAAAGC AAGTGGTGCC TGATTTTGAT
GAGCTGAAAT ACAACTACGA GCTGCTATGG CAAATGCCAA GCAACGAAGG TTACTTACAG
CTCGTGGGTA TCATGCAGAA ATTCGTTGAC CAAGCAATTT CGGCCAACAC TAACTATGAT
CCCACGCGTT TCGAAGGCCG TAAGGTTCCG ATGCAGACTC TGCTGAAAGA CTTACTCAAT
GCCTATAAGT TAGGTGTAAA AACGCTGTAC TACCATAACA CTCGCGATGG TGCATCGGAT
CAACACGATG ACATTACCAA CATAGAGAAA GAAGATGACG GCTGTGCTGG CGGCGCCTGC
AAAATCTAA
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| Protein sequence | MNSNMTVTKR CGARETIDLD KIHRVITWAA KGLKNVSVSE VELRTHLQFF DGIPTEAIHE
TIIKSAADLI SPESPDYQFL AARLAVFHLR KKAFGQFEPP KLYDHVTKLV ELGKYDMHIL
QDYTREELDI MDTYIDHWRD MNFSYAAVKQ LEGKYLVQNR VTHEIYESAQ FLYILVAACL
FARYPKETRL QYVKDFYDAV STFKISLPTP IMAGVRTPTR QFSSCVLIEC GDSLDSINAT
ASSIVKYVSQ RAGIGINAGR IRALGSPIRG GEAFHTGCLP FYKYFQTAVK SCSQGGVRGG
AATLFYPIWH LEVESLLVLK NNRGVEDNRI RHLDYGVQLN KLMYQRLIKG ENISLFSPSD
VPGLYDAFFE DQDEFERLYL QYEQDSSIRK KTLKAVELFS LMMQERASTG RIYIQNVDHC
NTHSPFDSKV APIRQSNLCL EIALPTKPLN NIDDPNGEIA LCTLSALNLG AIKNLAELEP
LADLAVRALD NLLDYQDYPI KAAEISSMNR RTLGIGVINF ANYLAKNGMK YSDGSANNLT
HKTFEAIQFY LLKASMNLAK EQGACPLFNE TTYAQGILPI DTYKRDLDKI CSEPLHLDWE
TLRQDIKQHG LRNSTLSALM PSETSSQISN ATNGIEPPRG LISVKASKDG QLKQVVPDFD
ELKYNYELLW QMPSNEGYLQ LVGIMQKFVD QAISANTNYD PTRFEGRKVP MQTLLKDLLN
AYKLGVKTLY YHNTRDGASD QHDDITNIEK EDDGCAGGAC KI
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