More than 300 homologs were found in PanDaTox collection
for query gene ECD_02160 on replicon CP001509
Organism: Escherichia coli BL21(DE3)



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02160  ribonucleotide-diphosphate reductase alpha subunit  100 
 
 
761 aa  1590    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2462  ribonucleotide-diphosphate reductase subunit alpha  96.58 
 
 
761 aa  1538    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.059403 
 
 
-
 
CP001637  EcDH1_1425  ribonucleoside-diphosphate reductase, alpha subunit  100 
 
 
761 aa  1590    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3021  ribonucleotide-diphosphate reductase subunit alpha  89.9 
 
 
762 aa  1450    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3368  ribonucleotide-diphosphate reductase subunit alpha  99.61 
 
 
761 aa  1583    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2801  ribonucleotide-diphosphate reductase subunit alpha  94.48 
 
 
761 aa  1509    Enterobacter sp. 638  Bacteria  normal  0.768732  normal  0.31743 
 
 
-
 
NC_011312  VSAL_I1769  ribonucleotide-diphosphate reductase subunit alpha  80.55 
 
 
758 aa  1282    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.738921  n/a   
 
 
-
 
NC_010158  YpAngola_0034  putative ribonucleoside-diphosphate reductase, alpha subunit  65.64 
 
 
548 aa  700    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2328  ribonucleotide-diphosphate reductase subunit alpha  79.89 
 
 
756 aa  1297    Colwellia psychrerythraea 34H  Bacteria  normal  0.333669  n/a   
 
 
-
 
NC_009708  YpsIP31758_2769  ribonucleotide-diphosphate reductase subunit alpha  90.94 
 
 
762 aa  1462    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0875  ribonucleotide-diphosphate reductase subunit alpha  80.16 
 
 
761 aa  1305    Vibrio cholerae O395  Bacteria  normal  0.0454664  n/a   
 
 
-
 
NC_004347  SO_2415  ribonucleotide-diphosphate reductase subunit alpha  80.71 
 
 
762 aa  1301    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010658  SbBS512_E2614  ribonucleotide-diphosphate reductase subunit alpha  99.87 
 
 
761 aa  1588    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1103  ribonucleotide-diphosphate reductase subunit alpha  90.01 
 
 
761 aa  1452    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.649141  n/a   
 
 
-
 
NC_011149  SeAg_B2413  ribonucleotide-diphosphate reductase subunit alpha  96.45 
 
 
761 aa  1536    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2517  ribonucleotide-diphosphate reductase subunit alpha  96.45 
 
 
761 aa  1536    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.299874 
 
 
-
 
NC_007204  Psyc_1263  ribonucleotide-diphosphate reductase subunit alpha  75.89 
 
 
758 aa  1223    Psychrobacter arcticus 273-4  Bacteria  normal  0.863588  normal 
 
 
-
 
NC_010498  EcSMS35_2385  ribonucleotide-diphosphate reductase subunit alpha  99.74 
 
 
761 aa  1586    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1037  ribonucleotide-diphosphate reductase subunit alpha  90.29 
 
 
762 aa  1456    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1417  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
761 aa  1590    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0448641 
 
 
-
 
NC_009783  VIBHAR_02733  ribonucleotide-diphosphate reductase subunit alpha  79.37 
 
 
760 aa  1292    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2407  ribonucleotide-diphosphate reductase subunit alpha  79.79 
 
 
762 aa  1291    Shewanella baltica OS195  Bacteria  normal  0.0329855  unclonable  0.0000182182 
 
 
-
 
NC_007520  Tcr_0463  ribonucleotide-diphosphate reductase subunit alpha  72.91 
 
 
760 aa  1167    Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00000234846  n/a   
 
 
-
 
NC_009438  Sputcn32_2073  ribonucleotide-diphosphate reductase subunit alpha  81.23 
 
 
762 aa  1309    Shewanella putrefaciens CN-32  Bacteria  normal  0.0110634  n/a   
 
 
-
 
NC_013456  VEA_003109  ribonucleotide reductase of class Ia (aerobic) alpha subunit  79.63 
 
 
760 aa  1298    Vibrio sp. Ex25  Bacteria  normal  0.810994  n/a   
 
 
-
 
NC_012892  B21_02119  hypothetical protein  100 
 
 
761 aa  1590    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02125  ribonucleotide-diphosphate reductase subunit alpha  79.82 
 
 
773 aa  1291    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.117976  n/a   
 
 
-
 
NC_009052  Sbal_2059  ribonucleotide-diphosphate reductase subunit alpha  79.92 
 
 
762 aa  1293    Shewanella baltica OS155  Bacteria  normal  0.0564291  n/a   
 
 
-
 
NC_007947  Mfla_1223  ribonucleotide-diphosphate reductase subunit alpha  77.21 
 
 
774 aa  1236    Methylobacillus flagellatus KT  Bacteria  normal  0.4349  normal 
 
 
-
 
NC_011205  SeD_A2621  ribonucleotide-diphosphate reductase subunit alpha  96.45 
 
 
780 aa  1534    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0895131 
 
 
-
 
NC_007954  Sden_1952  ribonucleotide-diphosphate reductase subunit alpha  79.79 
 
 
762 aa  1293    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2290  ribonucleotide-diphosphate reductase subunit alpha  79.92 
 
 
762 aa  1293    Shewanella baltica OS185  Bacteria  normal  0.0215742  n/a   
 
 
-
 
NC_013421  Pecwa_3213  ribonucleotide-diphosphate reductase subunit alpha  89.09 
 
 
761 aa  1438    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1122  ribonucleotide-diphosphate reductase subunit alpha  75.89 
 
 
758 aa  1221    Psychrobacter cryohalolentis K5  Bacteria  normal  0.0415952  normal  0.239593 
 
 
-
 
NC_010465  YPK_2848  ribonucleotide-diphosphate reductase subunit alpha  90.94 
 
 
762 aa  1462    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007984  BCI_0386  ribonucleotide-diphosphate reductase subunit alpha  82.92 
 
 
760 aa  1346    Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1577  ribonucleotide-diphosphate reductase subunit alpha  78.23 
 
 
758 aa  1261    Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.0106565 
 
 
-
 
NC_009832  Spro_3271  ribonucleotide-diphosphate reductase subunit alpha  89.76 
 
 
762 aa  1439    Serratia proteamaculans 568  Bacteria  normal  0.838311  normal 
 
 
-
 
NC_009092  Shew_1946  ribonucleotide-diphosphate reductase subunit alpha  81.89 
 
 
762 aa  1321    Shewanella loihica PV-4  Bacteria  normal  0.726077  normal  0.0192635 
 
 
-
 
NC_010159  YpAngola_A1313  ribonucleotide-diphosphate reductase subunit alpha  90.94 
 
 
762 aa  1462    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2374  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
761 aa  1590    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2473  ribonucleotide-diphosphate reductase subunit alpha  78.08 
 
 
771 aa  1288    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2055  ribonucleotide-diphosphate reductase subunit alpha  79.79 
 
 
762 aa  1290    Shewanella baltica OS223  Bacteria  normal  0.574862  unclonable  0.00000000000417711 
 
 
-
 
NC_008309  HS_1196  ribonucleotide-diphosphate reductase subunit alpha  82.26 
 
 
756 aa  1301    Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1916  ribonucleotide-diphosphate reductase subunit alpha  81.23 
 
 
762 aa  1310    Shewanella sp. MR-4  Bacteria  normal  0.626262  hitchhiker  0.000000207141 
 
 
-
 
NC_008322  Shewmr7_2062  ribonucleotide-diphosphate reductase subunit alpha  81.1 
 
 
762 aa  1306    Shewanella sp. MR-7  Bacteria  normal  0.0145049  unclonable  0.0000416662 
 
 
-
 
NC_008345  Sfri_2133  ribonucleotide-diphosphate reductase subunit alpha  79.27 
 
 
762 aa  1286    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2996  ribonucleotide-diphosphate reductase subunit alpha  78.47 
 
 
754 aa  1242    Marinomonas sp. MWYL1  Bacteria  normal  0.558234  normal 
 
 
-
 
NC_011094  SeSA_A2504  ribonucleotide-diphosphate reductase subunit alpha  96.45 
 
 
780 aa  1534    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2531  ribonucleotide-diphosphate reductase subunit alpha  99.74 
 
 
761 aa  1586    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1969  ribonucleotide-diphosphate reductase subunit alpha  80.97 
 
 
762 aa  1306    Shewanella sp. ANA-3  Bacteria  normal  0.210427  hitchhiker  0.0000566907 
 
 
-
 
NC_008700  Sama_1728  ribonucleotide-diphosphate reductase subunit alpha  81.1 
 
 
782 aa  1313    Shewanella amazonensis SB2B  Bacteria  normal  0.742662  normal  0.011326 
 
 
-
 
NC_010506  Swoo_2303  ribonucleotide-diphosphate reductase subunit alpha  80.58 
 
 
762 aa  1295    Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00675695 
 
 
-
 
NC_009831  Ssed_2306  ribonucleotide-diphosphate reductase subunit alpha  79.53 
 
 
762 aa  1283    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000160913 
 
 
-
 
NC_008709  Ping_1112  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
757 aa  1234    Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2064  ribonucleotide-diphosphate reductase subunit alpha  80.97 
 
 
762 aa  1316    Shewanella pealeana ATCC 700345  Bacteria  normal  0.709701  n/a   
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  30.03 
 
 
772 aa  338  1.9999999999999998e-91  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_009802  CCC13826_1895  ribonucleotide-diphosphate reductase subunit alpha  29.35 
 
 
791 aa  333  6e-90  Campylobacter concisus 13826  Bacteria  normal  0.594858  n/a   
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  29.22 
 
 
791 aa  333  9e-90  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0054  ribonucleoside-diphosphate reductase, alpha subunit  29.26 
 
 
788 aa  331  4e-89  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2704  ribonucleoside-diphosphate reductase, alpha subunit  30.81 
 
 
771 aa  330  7e-89  Brachyspira murdochii DSM 12563  Bacteria  normal  0.343813  n/a   
 
 
-
 
NC_012039  Cla_0025  ribonucleotide-diphosphate reductase subunit alpha  29.73 
 
 
791 aa  328  2.0000000000000001e-88  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1122  ribonucleotide-diphosphate reductase subunit alpha  28.48 
 
 
790 aa  322  9.999999999999999e-87  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1730  ribonucleotide-diphosphate reductase subunit alpha  28.99 
 
 
793 aa  321  3e-86  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  28.48 
 
 
789 aa  318  3e-85  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  28.48 
 
 
789 aa  318  3e-85  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  28.36 
 
 
789 aa  316  8e-85  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_2096  ribonucleotide-diphosphate reductase subunit alpha  27.72 
 
 
788 aa  316  9.999999999999999e-85  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  29.2 
 
 
842 aa  305  2.0000000000000002e-81  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_011071  Smal_0206  ribonucleoside-diphosphate reductase, alpha subunit  29.86 
 
 
803 aa  290  8e-77  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.959297 
 
 
-
 
NC_010001  Cphy_3223  ribonucleotide-diphosphate reductase subunit alpha  28.02 
 
 
764 aa  289  2e-76  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_4301  ribonucleoside-diphosphate reductase, alpha subunit  29.89 
 
 
769 aa  288  2.9999999999999996e-76  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4359  ribonucleoside-diphosphate reductase, alpha subunit  29.63 
 
 
769 aa  287  5.999999999999999e-76  Cyanothece sp. PCC 8802  Bacteria  normal  0.746758  normal  0.127314 
 
 
-
 
NC_007912  Sde_2458  ribonucleotide-diphosphate reductase subunit alpha  29.62 
 
 
969 aa  284  5.000000000000001e-75  Saccharophagus degradans 2-40  Bacteria  normal  0.0127946  normal 
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  27.98 
 
 
845 aa  281  4e-74  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0431  ribonucleoside-diphosphate reductase, alpha subunit  29.42 
 
 
926 aa  278  2e-73  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1738  ribonucleotide-diphosphate reductase subunit alpha  28.49 
 
 
942 aa  278  3e-73  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_0597  ribonucleotide-diphosphate reductase subunit alpha  28.49 
 
 
761 aa  277  6e-73  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4224  ribonucleotide-diphosphate reductase subunit alpha  29.59 
 
 
963 aa  276  7e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.194007  n/a   
 
 
-
 
NC_008463  PA14_49460  ribonucleotide-diphosphate reductase subunit alpha  29.59 
 
 
963 aa  277  7e-73  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00878086  normal  0.899958 
 
 
-
 
NC_013889  TK90_1442  ribonucleoside-diphosphate reductase, alpha subunit  29.58 
 
 
964 aa  277  7e-73  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0668  ribonucleotide-diphosphate reductase subunit alpha  29.72 
 
 
976 aa  276  8e-73  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142133  n/a   
 
 
-
 
NC_006368  lpp1738  ribonucleotide-diphosphate reductase subunit alpha  28.61 
 
 
942 aa  276  1.0000000000000001e-72  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010508  Bcenmc03_0564  ribonucleotide-diphosphate reductase subunit alpha  31.28 
 
 
1001 aa  274  5.000000000000001e-72  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.00066464 
 
 
-
 
NC_008060  Bcen_0112  ribonucleotide-diphosphate reductase subunit alpha  31.28 
 
 
1001 aa  274  5.000000000000001e-72  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290006  n/a   
 
 
-
 
NC_008542  Bcen2424_0594  ribonucleotide-diphosphate reductase subunit alpha  31.28 
 
 
1001 aa  274  5.000000000000001e-72  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2615  ribonucleotide-diphosphate reductase subunit alpha  27.61 
 
 
971 aa  274  6e-72  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.104389  n/a   
 
 
-
 
NC_007510  Bcep18194_A3679  ribonucleotide-diphosphate reductase subunit alpha  30.62 
 
 
998 aa  269  1e-70  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2703  ribonucleotide-diphosphate reductase subunit alpha  28.98 
 
 
954 aa  270  1e-70  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0522  ribonucleotide-diphosphate reductase subunit alpha  30.62 
 
 
999 aa  270  1e-70  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.114808 
 
 
-
 
NC_009439  Pmen_3151  ribonucleotide-diphosphate reductase subunit alpha  29.01 
 
 
968 aa  268  2e-70  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.474699 
 
 
-
 
NC_007948  Bpro_1107  ribonucleotide-diphosphate reductase subunit alpha  31.26 
 
 
969 aa  268  4e-70  Polaromonas sp. JS666  Bacteria  decreased coverage  0.000104617  normal 
 
 
-
 
NC_008390  Bamb_0497  ribonucleotide-diphosphate reductase subunit alpha  30.47 
 
 
999 aa  268  4e-70  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4610  ribonucleoside-diphosphate reductase, alpha subunit  30.24 
 
 
882 aa  267  5e-70  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.68692 
 
 
-
 
NC_008752  Aave_0864  ribonucleotide-diphosphate reductase subunit alpha  31.59 
 
 
983 aa  266  7e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0575744 
 
 
-
 
NC_012791  Vapar_0956  ribonucleotide-diphosphate reductase subunit alpha  30.18 
 
 
971 aa  266  8e-70  Variovorax paradoxus S110  Bacteria  normal  0.328606  n/a   
 
 
-
 
NC_002620  TC0214  ribonucleotide-diphosphate reductase subunit alpha  32.12 
 
 
1047 aa  266  1e-69  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1496  ribonucleotide-diphosphate reductase subunit alpha  31.63 
 
 
968 aa  266  1e-69  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0451  ribonucleoside diphosphate reductase, alpha subunit  30.36 
 
 
794 aa  266  1e-69  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_3001  ribonucleoside-diphosphate reductase  28.75 
 
 
821 aa  265  2e-69  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
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