More than 300 homologs were found in PanDaTox collection
for query gene Sama_1728 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012880  Dd703_1037  ribonucleotide-diphosphate reductase subunit alpha  82.02 
 
 
762 aa  1331    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02160  ribonucleotide-diphosphate reductase alpha subunit  81.1 
 
 
761 aa  1313    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0875  ribonucleotide-diphosphate reductase subunit alpha  77.95 
 
 
761 aa  1283    Vibrio cholerae O395  Bacteria  normal  0.0454664  n/a   
 
 
-
 
CP001637  EcDH1_1425  ribonucleoside-diphosphate reductase, alpha subunit  81.1 
 
 
761 aa  1313    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1417  ribonucleotide-diphosphate reductase subunit alpha  81.1 
 
 
761 aa  1313    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0448641 
 
 
-
 
NC_009665  Shew185_2290  ribonucleotide-diphosphate reductase subunit alpha  89.76 
 
 
762 aa  1454    Shewanella baltica OS185  Bacteria  normal  0.0215742  n/a   
 
 
-
 
NC_011149  SeAg_B2413  ribonucleotide-diphosphate reductase subunit alpha  80.71 
 
 
761 aa  1298    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2769  ribonucleotide-diphosphate reductase subunit alpha  79.53 
 
 
762 aa  1303    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2328  ribonucleotide-diphosphate reductase subunit alpha  78.74 
 
 
756 aa  1275    Colwellia psychrerythraea 34H  Bacteria  normal  0.333669  n/a   
 
 
-
 
NC_011353  ECH74115_3368  ribonucleotide-diphosphate reductase subunit alpha  80.97 
 
 
761 aa  1311    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2517  ribonucleotide-diphosphate reductase subunit alpha  80.71 
 
 
761 aa  1298    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.299874 
 
 
-
 
NC_004347  SO_2415  ribonucleotide-diphosphate reductase subunit alpha  91.21 
 
 
762 aa  1472    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_2801  ribonucleotide-diphosphate reductase subunit alpha  80.31 
 
 
761 aa  1305    Enterobacter sp. 638  Bacteria  normal  0.768732  normal  0.31743 
 
 
-
 
NC_011138  MADE_02125  ribonucleotide-diphosphate reductase subunit alpha  76.8 
 
 
773 aa  1253    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.117976  n/a   
 
 
-
 
NC_007204  Psyc_1263  ribonucleotide-diphosphate reductase subunit alpha  75.2 
 
 
758 aa  1227    Psychrobacter arcticus 273-4  Bacteria  normal  0.863588  normal 
 
 
-
 
NC_010506  Swoo_2303  ribonucleotide-diphosphate reductase subunit alpha  87.8 
 
 
762 aa  1417    Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00675695 
 
 
-
 
NC_009901  Spea_2064  ribonucleotide-diphosphate reductase subunit alpha  87.8 
 
 
762 aa  1425    Shewanella pealeana ATCC 700345  Bacteria  normal  0.709701  n/a   
 
 
-
 
NC_011094  SeSA_A2504  ribonucleotide-diphosphate reductase subunit alpha  80.84 
 
 
780 aa  1299    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0463  ribonucleotide-diphosphate reductase subunit alpha  74.57 
 
 
760 aa  1167    Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00000234846  n/a   
 
 
-
 
NC_009438  Sputcn32_2073  ribonucleotide-diphosphate reductase subunit alpha  90.68 
 
 
762 aa  1466    Shewanella putrefaciens CN-32  Bacteria  normal  0.0110634  n/a   
 
 
-
 
NC_009654  Mmwyl1_2996  ribonucleotide-diphosphate reductase subunit alpha  76.45 
 
 
754 aa  1206    Marinomonas sp. MWYL1  Bacteria  normal  0.558234  normal 
 
 
-
 
NC_011080  SNSL254_A2462  ribonucleotide-diphosphate reductase subunit alpha  80.84 
 
 
761 aa  1298    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.059403 
 
 
-
 
NC_011312  VSAL_I1769  ribonucleotide-diphosphate reductase subunit alpha  78.74 
 
 
758 aa  1252    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.738921  n/a   
 
 
-
 
NC_010658  SbBS512_E2614  ribonucleotide-diphosphate reductase subunit alpha  81.1 
 
 
761 aa  1313    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3213  ribonucleotide-diphosphate reductase subunit alpha  81.36 
 
 
761 aa  1321    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02733  ribonucleotide-diphosphate reductase subunit alpha  78.48 
 
 
760 aa  1286    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_1223  ribonucleotide-diphosphate reductase subunit alpha  74.97 
 
 
774 aa  1233    Methylobacillus flagellatus KT  Bacteria  normal  0.4349  normal 
 
 
-
 
NC_007954  Sden_1952  ribonucleotide-diphosphate reductase subunit alpha  87.8 
 
 
762 aa  1421    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1577  ribonucleotide-diphosphate reductase subunit alpha  76.42 
 
 
758 aa  1245    Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.0106565 
 
 
-
 
NC_012917  PC1_1103  ribonucleotide-diphosphate reductase subunit alpha  81.63 
 
 
761 aa  1328    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.649141  n/a   
 
 
-
 
NC_007969  Pcryo_1122  ribonucleotide-diphosphate reductase subunit alpha  75.2 
 
 
758 aa  1233    Psychrobacter cryohalolentis K5  Bacteria  normal  0.0415952  normal  0.239593 
 
 
-
 
NC_010159  YpAngola_A1313  ribonucleotide-diphosphate reductase subunit alpha  79.53 
 
 
762 aa  1303    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007984  BCI_0386  ribonucleotide-diphosphate reductase subunit alpha  75.59 
 
 
760 aa  1237    Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2374  ribonucleotide-diphosphate reductase subunit alpha  81.1 
 
 
761 aa  1313    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3271  ribonucleotide-diphosphate reductase subunit alpha  80.31 
 
 
762 aa  1308    Serratia proteamaculans 568  Bacteria  normal  0.838311  normal 
 
 
-
 
NC_009092  Shew_1946  ribonucleotide-diphosphate reductase subunit alpha  88.32 
 
 
762 aa  1428    Shewanella loihica PV-4  Bacteria  normal  0.726077  normal  0.0192635 
 
 
-
 
NC_010465  YPK_2848  ribonucleotide-diphosphate reductase subunit alpha  79.53 
 
 
762 aa  1303    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2531  ribonucleotide-diphosphate reductase subunit alpha  80.97 
 
 
761 aa  1310    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2473  ribonucleotide-diphosphate reductase subunit alpha  78.5 
 
 
771 aa  1288    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3021  ribonucleotide-diphosphate reductase subunit alpha  82.28 
 
 
762 aa  1331    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003109  ribonucleotide reductase of class Ia (aerobic) alpha subunit  78.61 
 
 
760 aa  1285    Vibrio sp. Ex25  Bacteria  normal  0.810994  n/a   
 
 
-
 
NC_008309  HS_1196  ribonucleotide-diphosphate reductase subunit alpha  79.66 
 
 
756 aa  1267    Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1916  ribonucleotide-diphosphate reductase subunit alpha  91.47 
 
 
762 aa  1476    Shewanella sp. MR-4  Bacteria  normal  0.626262  hitchhiker  0.000000207141 
 
 
-
 
NC_008322  Shewmr7_2062  ribonucleotide-diphosphate reductase subunit alpha  91.34 
 
 
762 aa  1472    Shewanella sp. MR-7  Bacteria  normal  0.0145049  unclonable  0.0000416662 
 
 
-
 
NC_011663  Sbal223_2055  ribonucleotide-diphosphate reductase subunit alpha  89.63 
 
 
762 aa  1452    Shewanella baltica OS223  Bacteria  normal  0.574862  unclonable  0.00000000000417711 
 
 
-
 
NC_008345  Sfri_2133  ribonucleotide-diphosphate reductase subunit alpha  88.71 
 
 
762 aa  1437    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2059  ribonucleotide-diphosphate reductase subunit alpha  89.76 
 
 
762 aa  1454    Shewanella baltica OS155  Bacteria  normal  0.0564291  n/a   
 
 
-
 
NC_010158  YpAngola_0034  putative ribonucleoside-diphosphate reductase, alpha subunit  64.09 
 
 
548 aa  684    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2385  ribonucleotide-diphosphate reductase subunit alpha  80.97 
 
 
761 aa  1310    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1969  ribonucleotide-diphosphate reductase subunit alpha  91.73 
 
 
762 aa  1478    Shewanella sp. ANA-3  Bacteria  normal  0.210427  hitchhiker  0.0000566907 
 
 
-
 
NC_009997  Sbal195_2407  ribonucleotide-diphosphate reductase subunit alpha  89.9 
 
 
762 aa  1456    Shewanella baltica OS195  Bacteria  normal  0.0329855  unclonable  0.0000182182 
 
 
-
 
NC_008700  Sama_1728  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
782 aa  1631    Shewanella amazonensis SB2B  Bacteria  normal  0.742662  normal  0.011326 
 
 
-
 
NC_011205  SeD_A2621  ribonucleotide-diphosphate reductase subunit alpha  80.71 
 
 
780 aa  1297    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0895131 
 
 
-
 
NC_012892  B21_02119  hypothetical protein  81.1 
 
 
761 aa  1313    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1112  ribonucleotide-diphosphate reductase subunit alpha  76.64 
 
 
757 aa  1217    Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2306  ribonucleotide-diphosphate reductase subunit alpha  87.4 
 
 
762 aa  1417    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000160913 
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  30.75 
 
 
791 aa  347  4e-94  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1895  ribonucleotide-diphosphate reductase subunit alpha  29.96 
 
 
791 aa  340  7e-92  Campylobacter concisus 13826  Bacteria  normal  0.594858  n/a   
 
 
-
 
NC_013512  Sdel_0054  ribonucleoside-diphosphate reductase, alpha subunit  30.06 
 
 
788 aa  334  3e-90  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2704  ribonucleoside-diphosphate reductase, alpha subunit  31 
 
 
771 aa  333  6e-90  Brachyspira murdochii DSM 12563  Bacteria  normal  0.343813  n/a   
 
 
-
 
NC_009715  CCV52592_1122  ribonucleotide-diphosphate reductase subunit alpha  29.84 
 
 
790 aa  332  1e-89  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  28.72 
 
 
772 aa  324  5e-87  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_009714  CHAB381_1730  ribonucleotide-diphosphate reductase subunit alpha  29.75 
 
 
793 aa  323  6e-87  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0025  ribonucleotide-diphosphate reductase subunit alpha  29.47 
 
 
791 aa  323  9.999999999999999e-87  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_2096  ribonucleotide-diphosphate reductase subunit alpha  28.64 
 
 
788 aa  322  1.9999999999999998e-86  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  29.77 
 
 
789 aa  319  1e-85  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  29.77 
 
 
789 aa  319  1e-85  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  29.64 
 
 
789 aa  318  2e-85  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  28.97 
 
 
842 aa  297  4e-79  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_013411  GYMC61_1699  ribonucleotide-diphosphate reductase subunit alpha  27.41 
 
 
760 aa  289  2e-76  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4359  ribonucleoside-diphosphate reductase, alpha subunit  30.32 
 
 
769 aa  287  5.999999999999999e-76  Cyanothece sp. PCC 8802  Bacteria  normal  0.746758  normal  0.127314 
 
 
-
 
NC_011726  PCC8801_4301  ribonucleoside-diphosphate reductase, alpha subunit  30.05 
 
 
769 aa  286  1.0000000000000001e-75  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_3223  ribonucleotide-diphosphate reductase subunit alpha  27.84 
 
 
764 aa  285  3.0000000000000004e-75  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0597  ribonucleotide-diphosphate reductase subunit alpha  28 
 
 
761 aa  279  1e-73  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2458  ribonucleotide-diphosphate reductase subunit alpha  28.82 
 
 
969 aa  279  1e-73  Saccharophagus degradans 2-40  Bacteria  normal  0.0127946  normal 
 
 
-
 
NC_011071  Smal_0206  ribonucleoside-diphosphate reductase, alpha subunit  28.55 
 
 
803 aa  277  7e-73  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.959297 
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  29.04 
 
 
845 aa  274  5.000000000000001e-72  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0431  ribonucleoside-diphosphate reductase, alpha subunit  29.51 
 
 
926 aa  273  8.000000000000001e-72  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1442  ribonucleoside-diphosphate reductase, alpha subunit  28.38 
 
 
964 aa  271  2.9999999999999997e-71  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2615  ribonucleotide-diphosphate reductase subunit alpha  28.49 
 
 
971 aa  271  4e-71  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.104389  n/a   
 
 
-
 
NC_006369  lpl1738  ribonucleotide-diphosphate reductase subunit alpha  28.38 
 
 
942 aa  270  7e-71  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1738  ribonucleotide-diphosphate reductase subunit alpha  28.38 
 
 
942 aa  269  2e-70  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_0668  ribonucleotide-diphosphate reductase subunit alpha  28.74 
 
 
976 aa  269  2e-70  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142133  n/a   
 
 
-
 
NC_012791  Vapar_0956  ribonucleotide-diphosphate reductase subunit alpha  29.02 
 
 
971 aa  267  4e-70  Variovorax paradoxus S110  Bacteria  normal  0.328606  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1736  ribonucleotide-diphosphate reductase subunit alpha  27.67 
 
 
941 aa  267  5.999999999999999e-70  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0436  ribonucleotide-diphosphate reductase subunit alpha  27.67 
 
 
941 aa  266  8e-70  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_002620  TC0214  ribonucleotide-diphosphate reductase subunit alpha  29.77 
 
 
1047 aa  264  4e-69  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4610  ribonucleoside-diphosphate reductase, alpha subunit  29.88 
 
 
882 aa  265  4e-69  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.68692 
 
 
-
 
NC_009656  PSPA7_4224  ribonucleotide-diphosphate reductase subunit alpha  28.24 
 
 
963 aa  264  4e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  0.194007  n/a   
 
 
-
 
NC_008463  PA14_49460  ribonucleotide-diphosphate reductase subunit alpha  28.24 
 
 
963 aa  264  4.999999999999999e-69  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00878086  normal  0.899958 
 
 
-
 
NC_009441  Fjoh_0521  ribonucleoside-diphosphate reductase, alpha subunit  28.97 
 
 
797 aa  263  1e-68  Flavobacterium johnsoniae UW101  Bacteria  normal  0.359224  n/a   
 
 
-
 
NC_007406  Nwi_2888  ribonucleotide-diphosphate reductase subunit alpha  27.89 
 
 
969 aa  263  1e-68  Nitrobacter winogradskyi Nb-255  Bacteria  normal  decreased coverage  0.00821454 
 
 
-
 
NC_008782  Ajs_3632  ribonucleotide-diphosphate reductase subunit alpha  27.31 
 
 
972 aa  261  3e-68  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1107  ribonucleotide-diphosphate reductase subunit alpha  27.86 
 
 
969 aa  261  3e-68  Polaromonas sp. JS666  Bacteria  decreased coverage  0.000104617  normal 
 
 
-
 
NC_007333  Tfu_3001  ribonucleoside-diphosphate reductase  28.19 
 
 
821 aa  261  4e-68  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2942  ribonucleotide-diphosphate reductase subunit alpha  27.31 
 
 
974 aa  261  4e-68  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3214  ribonucleotide-diphosphate reductase subunit alpha  28.03 
 
 
971 aa  260  8e-68  Methylibium petroleiphilum PM1  Bacteria  normal  0.472198  normal  0.0671441 
 
 
-
 
NC_010002  Daci_1501  ribonucleotide-diphosphate reductase subunit alpha  28.79 
 
 
973 aa  259  1e-67  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3347  ribonucleotide-diphosphate reductase subunit alpha  29.14 
 
 
981 aa  259  1e-67  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2703  ribonucleotide-diphosphate reductase subunit alpha  27.72 
 
 
954 aa  259  1e-67  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
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