| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1946 |
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| Symbol | |
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| ID | 4920979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2247269 |
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| End bp | 2249557 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163515 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_001094071 |
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| Protein GI | 127512874 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.726077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0192635 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCA ATATGCAAGT CACGAAGCGC AGTGGCGAAC GTGAAACCAT CGATCTCGAT
AAGATCCACC GAGTGATCAC TTGGGCGGCC AAAGGACTGA ATAACGTCTC AGTATCGGAA
GTCGAATTAC GTTCACACCT TCAGTTCTAT GATGGAATCC CAACTGAAGC GATCCACGAA
ACCATTATTA AGGCCGCTGC CGACCTTATC TCGCCAGAGT CTCCAGACTA TCAGTTCCTT
TCTGCACGTC TGGCTATCTT CCACCTGCGT AAGAAAGCCT TCGGCCAGTT TGAGCCGCCT
TCGCTATACG ACCATGTGGT GAAGTTGGTT GAGCTGGGTA AATATGACAC GCATATTCTG
AACGACTATA GCCGCGAAGA ATTAGATACG CTCGACAGCT ATATCGACCA CTGGCGCGAC
ATGAACTTCT CTTATGCCGC GGTTAAGCAG TTGGAAGGTA AGTACCTGGT TCAAAACCGT
GTGACTCACG AAGTCTACGA GAGTGCGCAG TTCCTCTATA TTCTGGTTGC GGCTTGTCTG
TTCGCCAACT ACCCGAGAGA GACGCGTCTT CAGTACGTTA AAGATTTCTA TGACGCGACC
TCGACCTTTA AGATCTCGCT ACCGACACCT ATCATGTCAG GTGTGCGTAC ACCTACACGT
CAGTTCAGCT CTTGCGTGCT GATCGAGTGT GGCGACAGCT TAGACTCAAT CAATGCGACC
GCCTCTTCTA TTGTGAAGTA TGTGTCGCAA CGAGCGGGCA TAGGGGTCAA CGCCGGTCGT
ATCCGAGCGC TGGGTAGCCC AATTCGCGGC GGCGAGGCAT TCCATACAGG TTGTCTGCCT
TTCTATAAGT ATTTCCAGAC CGCGGTGAAG TCTTGCTCTC AAGGCGGCGT TCGCGGCGGC
GCGGCAACCC TCTTCTACCC TATGTGGCAC CTGGAAGTTG AGTCTCTGCT GGTACTTAAG
AACAACCGCG GCGTCGAAGA TAACCGTATT CGTCACCTGG ACTACGGCGT GCAGCTGAAC
AAGCTGATGT ACCAACGTCT TATTCAGGGC GGCATGATCA CTCTATTCAG TCCATCAGAT
GTACCAGGCC TGTACGATGC CTTCTTCGAA GACCAGGCAG AGTTCGAGCG TCTGTATGTG
AAGTATGAGC AGGATGAGAG CATACGTAAG AAGCAGATCA AGGCGGTAGA ACTCTTCTCC
CTGATGATGC AGGAGCGTGC CTCTACCGGT CGTATCTATA TCCAGAACGT CGATCACTGT
AATACCCATA GCCCATTCGA TGCTAAGGTT GCCCCGGTAC GTCAGTCGAA CCTGTGTCTT
GAGATTGCAT TGCCAACCAA GCCGCTGAAC AACATCGACG ACCCCGATGG TGAGATCGCC
CTGTGTACCC TATCTGCGTT GAACCTGGGT GCCATCAAGA AACTTGATGA GCTGGAAAGC
CTGGCAGATT TGGCCGTGCG CGCGCTCGAT AGTCTACTCG ACTATCAGGA CTACCCGATC
GTCTCGGCAC ATAAGGGCTC GATGAACCGT CGTACCTTGG GTATAGGCGT GATCAACTTT
GCCAACTACC TGGCTAAAGA AGGTGTGCGT TACTCAGACG GCAGCGCCAA CGGCATCACT
CATAAGACCT TCGAAGCGAT CCAGTACTAT CTGCTGAAGG CCTCGATGAA TCTGGCGAAA
GAGCAAGGCG CCTGCCCTGC CTTCCACGAA ACCAATTACG CTAAGGGTAT CCTGCCTATC
GATACCTACA AGCGCGATCT CGATAAGATC TGTGACGAGC CACTACACAT GGATTGGGAA
ACCCTGCGCG GGGAGATCAA GACTCACGGC CTGCGTAACT CGACCCTATC TGCCCTGATG
CCATCTGAGA CCTCATCACA GATCTCTAAC GCGACAAACG GTATCGAGCC GCCACGAGGC
CTGATCAGCG TTAAGGCGAG TAAGGATGGT CAGCTCAAGC AGGTGGTCCC TGATTTTGAG
AAGTACCAGT ACAGCTATGA GCTGCTGTGG CAGATGCCAG GCAACGAAGG TTACCTGCAG
CTGGTCGGCT TGATGCAGAA GTTTGTTGAC CAATCTATCT CGGCCAACAC CAACTATGAC
CCAAGCCGCT TCCCAGGTGC CAAGGTGCCT ATGCAGGTGC TGCTGAAAGA CCTGTTGACC
GCATATAAAT ACGGTGTGAA GACACTTTAC TATCACAACA CGCGTGACGG TGCGTCAGAC
AAATATGACG ATATCACCTC CATTGAGAAA GAAGACGATA GCTGCGCAGG CGGCGCATGT
AAGATCTAA
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| Protein sequence | MNSNMQVTKR SGERETIDLD KIHRVITWAA KGLNNVSVSE VELRSHLQFY DGIPTEAIHE
TIIKAAADLI SPESPDYQFL SARLAIFHLR KKAFGQFEPP SLYDHVVKLV ELGKYDTHIL
NDYSREELDT LDSYIDHWRD MNFSYAAVKQ LEGKYLVQNR VTHEVYESAQ FLYILVAACL
FANYPRETRL QYVKDFYDAT STFKISLPTP IMSGVRTPTR QFSSCVLIEC GDSLDSINAT
ASSIVKYVSQ RAGIGVNAGR IRALGSPIRG GEAFHTGCLP FYKYFQTAVK SCSQGGVRGG
AATLFYPMWH LEVESLLVLK NNRGVEDNRI RHLDYGVQLN KLMYQRLIQG GMITLFSPSD
VPGLYDAFFE DQAEFERLYV KYEQDESIRK KQIKAVELFS LMMQERASTG RIYIQNVDHC
NTHSPFDAKV APVRQSNLCL EIALPTKPLN NIDDPDGEIA LCTLSALNLG AIKKLDELES
LADLAVRALD SLLDYQDYPI VSAHKGSMNR RTLGIGVINF ANYLAKEGVR YSDGSANGIT
HKTFEAIQYY LLKASMNLAK EQGACPAFHE TNYAKGILPI DTYKRDLDKI CDEPLHMDWE
TLRGEIKTHG LRNSTLSALM PSETSSQISN ATNGIEPPRG LISVKASKDG QLKQVVPDFE
KYQYSYELLW QMPGNEGYLQ LVGLMQKFVD QSISANTNYD PSRFPGAKVP MQVLLKDLLT
AYKYGVKTLY YHNTRDGASD KYDDITSIEK EDDSCAGGAC KI
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