| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2615 |
|---|
| Symbol | |
|---|
| ID | 7315334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2755661 |
|---|
| End bp | 2758576 |
|---|
| Gene Length | 2916 bp |
|---|
| Protein Length | 971 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643617516 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_002514677 |
|---|
| Protein GI | 220935778 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.104389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGG ACGTCAGCAC CGAACAGAAT ACCCGCCCGG CCGCCGCAGG CGCCGCACCC
GAAGTCAGCC CAGAATCCCA GGTGACCGCC GCCGAACTGG CGGCCACCGC CCCCGGTCAG
CACCACGTGA TCCGCCGTAA CGGCAAGGTC ACCGCCTTCG ACGCCTCCAA GATCAAGGTG
GCCATCACCA AGGCCTTCCT GGCAGTGGAG GGCGGCAATG CCGCCGCCAG CCGCCGCATC
CACGACATCG TCGCCGAGCT CGCCGAGCAG GTGTGCGAGA ACCTGTTCCG CCGCGCCGGC
GGCTCCGCCG TCACCGTGCA CATCGAGGAC ATCCAGGACC AGGTGGAACT GGCCCTGATG
CGCGGCGGCC ACCACAAGAT CGCCCGCGCC TACGTGCTCT ACCGGGAGCA GCAGGCCCAG
AAGCGCGCCG CCGAGGCCGC CACCAGGAAG CCCGCCCGGC AGGCCGAGGC CGCCGTCATC
CACGTCACCC GTCCCGACGG CACCCGTGCC CCCCTGGACA CCGCCCGCCT GGTCAAGGTG
GTGGAAGAGG CCTGCGCCGG TCTCGAGGCC GTGGACGGCC AGCTGATCCT CAACGAGGCC
CAGCGCAACC TGTTCGACGG CGTGGCCGAG AAGGACGTGG GCACCGCGCT GGTCATGAGC
GCCCGGGTGC TCATCGAGAA GGAGCCCAAC TACTCCCAGG TCACCGCCCG CCTGCTCATG
GACACCCTGC GCCGCGAGGC TCTGTCCTTC ATCGCCGGCC TGCCCCAGGC CGCCACCCAG
GCGGAGATGA CCCAGCGCTA CCCGGAATAC TTCAAGGCCT ACGTGAAGCG CGCCGCCGAG
CTGGAACTGC TGGACAGCGA GCTGACCCGC TACGACCTGG ACCGCCTGGG CGCCGCGCTC
AAGCCCGAGC GCGACCTGCA GTTCACCTAC CTGGGCCTGC AGACCCTCTA CGACCGCTAC
TTCATCCACT CCGGCGGCGT GCGCTTCGAG CTGCCCCAGG CCTTCTTCAT GCGCGTGGCC
ATGGGTCTGG CCATCCACGA GATCGACCGT GAAGGCCGCG CCATCGAGTT CTACAACCTG
CTGAGCTCCT TCGACTTCAT GAGCTCCACG CCGACCCTGT TCAACTCCGG CACCCTGCGT
CCGCAGCTCT CCTCCTGCTA CCTGACCACC GTGCCCGACG ACCTGGACGG CATCTTCGGC
GCCATCAAGG ACAACGCCCT GCTGTCCAAG TTTGCCGGTG GCCTGGGCAA CGACTGGACC
CGGGTGCGCG GCATGGGCGC CCACATCAAG GGCACCAACG GCAAGTCCCA GGGCGTGGTG
CCGTTCCTGA AGGTCGCCAA CGACACGGCG GTCGCCGTGA ACCAGGGCGG CAAGCGCAAG
GGCGCCGTGT GCGCCTATCT CGAGACCTGG CACGTGGACG TGGAAGAGTT CATCGAGCTG
CGCAAGAACA CCGGCGACGA CCGCCGCCGC ACCCACGACA TGAACAGCGC CAACTGGATT
CCCGATCTCT TCATGAAGCG CGTGGCGGAA GAGGGCGAGT GGACCCTGTT CTCCCCCAAC
GAGACCCCCG ACCTGCATGA CCTGGTCGGC GAGGCCTTCG AGCAGCGCTA CGCCGAGTAC
GAGGCCAAGG CCGCCCGGGG CGAGATCAAG GTGTTCAAGA AGCTCAAGGC CGTGGACCTG
TGGCGCAAGA TGCTCGCCAT GCTGTTCGAG ACCGGCCATC CCTGGATGAC CTTCAAGGAC
CCCTGCAACC TGCGCAGCCC CCAGCAGCAC GTGGGCGTGG TGCACAGCTC GAATCTCTGC
ACCGAGATCA CGCTCAACAC CTCGGACGAC GAGATCGCCG TGTGCAACCT GGGCTCCGTG
AACCTGGCCG CCCACGTGGA CGAGAACGGC CTGAACCTGG AGAAGCTGGA GCGCACGGTG
AGCACCGCCA TGCGCATGCT GGACAACGTC ATCGACTACA ACTACTACTC CGTGCCCCAG
GCCCGGCGCT CCAACCTGCG CCACCGTCCG GTGGGCCTGG GCATCATGGG TTTCCAGGAT
GCCCTCTACC AGCAGCGCAT CCCCTACGCC TCGGAAGATG CCGTGGAGTT CGCCGACCGT
TCCATGGAGG CGGTCTCCTA CTACGCCATC AAGGCCTCCA CGGATCTCGC CGAGGAGCGC
GGCCGCTACC AGAGCTTCGA CGGCTCCCTG TGGAGCCAGG GCGTGCTGCC CATCGACTCC
ATCGAGCTGC TGGCCAAGTC CCGCGGCCAG TACCTGCAGC AGGACACCAG CATGACCTTC
GACTGGGACA GCCTGCGCGA CCGGGTCAAG ACCGTGGGCA TGCGCAACTC CAACACCATG
GCCATCGCGC CGACGGCGAC GATCTCCAAC ATCTGCGGCG TGAGCCAGTC CATCGAGCCC
ACCTACCAGA ACCTGTTCGT GAAATCGAAC CTCTCCGGCG AGTTCACCGT GATCAACCCG
AACCTGGTGA ACGACCTGAA GGCGCGCAAG CTGTGGGACG AGGTGATGGT CAACGACCTC
AAGTACTACG ACGGCTCCGT GCAGCCCATC GACCGGGTGC CCGCGGACCT CAAGCAGCTC
TACGCCACCG CCTTCGAGCT GGACGCCCGC TGGCTGGTGG AGGCCGCCTC CCGCCGCCAG
AAGTGGCTGG ACCAGGCCCA GAGCCTGAAC CTCTACATGG CCGAGCCCTC CGGCAAGAAG
CTGGACAATC TCTACAAGCT CGCCTGGGTG CGGGGTCTGA AGACCACCTA CTACCTGCGC
TCCATGGGCG CCACCCACGT GGAGAAGAGC ACCGTGGCCG ATGCCAGCCG GGCTAACAAG
CTTAACGCGG TGAAGGGCGC CGATGCGGCC GCGCCCGCCA CCGAGGCGCC GAAGATGTGC
TCGATCCTCG ATCCCGAATG CGAAGCCTGC CAATAG
|
|---|
| Protein sequence | MQTDVSTEQN TRPAAAGAAP EVSPESQVTA AELAATAPGQ HHVIRRNGKV TAFDASKIKV
AITKAFLAVE GGNAAASRRI HDIVAELAEQ VCENLFRRAG GSAVTVHIED IQDQVELALM
RGGHHKIARA YVLYREQQAQ KRAAEAATRK PARQAEAAVI HVTRPDGTRA PLDTARLVKV
VEEACAGLEA VDGQLILNEA QRNLFDGVAE KDVGTALVMS ARVLIEKEPN YSQVTARLLM
DTLRREALSF IAGLPQAATQ AEMTQRYPEY FKAYVKRAAE LELLDSELTR YDLDRLGAAL
KPERDLQFTY LGLQTLYDRY FIHSGGVRFE LPQAFFMRVA MGLAIHEIDR EGRAIEFYNL
LSSFDFMSST PTLFNSGTLR PQLSSCYLTT VPDDLDGIFG AIKDNALLSK FAGGLGNDWT
RVRGMGAHIK GTNGKSQGVV PFLKVANDTA VAVNQGGKRK GAVCAYLETW HVDVEEFIEL
RKNTGDDRRR THDMNSANWI PDLFMKRVAE EGEWTLFSPN ETPDLHDLVG EAFEQRYAEY
EAKAARGEIK VFKKLKAVDL WRKMLAMLFE TGHPWMTFKD PCNLRSPQQH VGVVHSSNLC
TEITLNTSDD EIAVCNLGSV NLAAHVDENG LNLEKLERTV STAMRMLDNV IDYNYYSVPQ
ARRSNLRHRP VGLGIMGFQD ALYQQRIPYA SEDAVEFADR SMEAVSYYAI KASTDLAEER
GRYQSFDGSL WSQGVLPIDS IELLAKSRGQ YLQQDTSMTF DWDSLRDRVK TVGMRNSNTM
AIAPTATISN ICGVSQSIEP TYQNLFVKSN LSGEFTVINP NLVNDLKARK LWDEVMVNDL
KYYDGSVQPI DRVPADLKQL YATAFELDAR WLVEAASRRQ KWLDQAQSLN LYMAEPSGKK
LDNLYKLAWV RGLKTTYYLR SMGATHVEKS TVADASRANK LNAVKGADAA APATEAPKMC
SILDPECEAC Q
|
|---|
| |