34 homologs were found in PanDaTox collection
for query gene Saro_1233 on replicon NC_007794
Organism: Novosphingobium aromaticivorans DSM 12444



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007794  Saro_1233  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  100 
 
 		 242 aa  487  1e-137  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0679707  n/a   
 
 
-
 
NC_009654  Mmwyl1_3921  protocatechuate 4,5-dioxygenase subunit alpha  60.19 
 
 		 115 aa  138  7.999999999999999e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.925791  normal  1 
 
 
-
 
NC_009485  BBta_2733  protocatechuate 4,5-dioxygenase subunit alpha  57.94 
 
 		 117 aa  133  3e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.453288 
 
 
-
 
NC_010002  Daci_0915  protocatechuate 4,5-dioxygenase subunit alpha  64.65 
 
 		 113 aa  131  1.0000000000000001e-29  Delftia acidovorans SPH-1  Bacteria  normal  0.0109457  normal  1 
 
 
-
 
NC_010524  Lcho_3698  protocatechuate 4,5-dioxygenase subunit alpha  61.62 
 
 		 120 aa  129  3e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007908  Rfer_0295  protocatechuate 4,5-dioxygenase subunit alpha  62.24 
 
 		 117 aa  126  4.0000000000000003e-28  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3939  protocatechuate 4,5-dioxygenase subunit alpha  55 
 
 		 120 aa  123  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_2734  protocatechuate 4,5-dioxygenase subunit alpha  58.16 
 
 		 121 aa  119  6e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0103639  normal  0.0458484 
 
 
-
 
NC_007778  RPB_1060  protocatechuate 4,5-dioxygenase subunit alpha  56.64 
 
 		 127 aa  113  3e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1198  protocatechuate 4,5-dioxygenase subunit alpha  55.24 
 
 		 124 aa  109  4.0000000000000004e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_38370  protocatechuate 4,5-dioxygenase alpha subunit  45.92 
 
 		 116 aa  89.7  4e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008538  Arth_4373  protocatechuate 4,5-dioxygenase  42.42 
 
 		 433 aa  89  6e-17  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3886  protocatechuate 4,5-dioxygenase subunit alpha  39.82 
 
 		 128 aa  85.5  6e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3814  protocatechuate 4,5-dioxygenase subunit alpha  38 
 
 		 135 aa  84.7  0.000000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.345259  normal  0.226916 
 
 
-
 
NC_010623  Bphy_3205  protocatechuate 4,5-dioxygenase, alpha subunit  43.56 
 
 		 135 aa  83.2  0.000000000000003  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_5182  protocatechuate 4,5-dioxygenase subunit alpha  38.38 
 
 		 129 aa  83.6  0.000000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_0873  protocatechuate 4,5-dioxygenase subunit alpha  37 
 
 		 129 aa  82.8  0.000000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.58932 
 
 
-
 
NC_007908  Rfer_0331  protocatechuate 4,5-dioxygenase subunit alpha  36.13 
 
 		 147 aa  82.4  0.000000000000006  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0508  protocatechuate 4,5-dioxygenase subunit alpha  40 
 
 		 135 aa  81.6  0.000000000000009  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_2028  protocatechuate 4,5-dioxygenase subunit alpha  34.26 
 
 		 150 aa  81.6  0.00000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.261713  normal  1 
 
 
-
 
NC_007963  Csal_0325  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  40.57 
 
 		 118 aa  81.6  0.00000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0235577  n/a   
 
 
-
 
NC_010002  Daci_4446  protocatechuate 4,5-dioxygenase subunit alpha  37.37 
 
 		 152 aa  80.9  0.00000000000002  Delftia acidovorans SPH-1  Bacteria  normal  0.256518  normal  0.163642 
 
 
-
 
NC_009485  BBta_2701  protocatechuate 4,5-dioxygenase subunit alpha  36 
 
 		 129 aa  79.3  0.00000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.542053 
 
 
-
 
NC_007958  RPD_0983  protocatechuate 4,5-dioxygenase subunit alpha  37.37 
 
 		 129 aa  79  0.00000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0570785  normal  1 
 
 
-
 
NC_010524  Lcho_3636  protocatechuate 4,5-dioxygenase subunit alpha  34.65 
 
 		 146 aa  77  0.0000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008786  Veis_0170  protocatechuate 4,5-dioxygenase  37.37 
 
 		 443 aa  76.6  0.0000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.827608  normal  1 
 
 
-
 
NC_007794  Saro_2813  protocatechuate 4,5-dioxygenase subunit alpha  33.33 
 
 		 145 aa  63.2  0.000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.405358  n/a   
 
 
-
 
NC_007974  Rmet_3709  protocatechuate 4,5-dioxygenase  29.79 
 
 		 430 aa  46.2  0.0004  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.0482429 
 
 
-
 
NC_010087  Bmul_6041  protocatechuate 4,5-dioxygenase  29.37 
 
 		 434 aa  45.8  0.0006  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.0923014 
 
 
-
 
NC_010501  PputW619_2030  protocatechuate 4,5-dioxygenase  28.41 
 
 		 420 aa  45.4  0.0008  Pseudomonas putida W619  Bacteria  normal  0.638746  normal  1 
 
 
-
 
NC_009512  Pput_3200  protocatechuate 4,5-dioxygenase  28.41 
 
 		 420 aa  45.4  0.0009  Pseudomonas putida F1  Bacteria  normal  0.0373614  normal  0.0556534 
 
 
-
 
NC_002947  PP_2518  protocatechuate 4,5-dioxygenase  28.41 
 
 		 420 aa  45.4  0.0009  Pseudomonas putida KT2440  Bacteria  normal  0.618608  normal  1 
 
 
-
 
NC_010625  Bphy_6377  protocatechuate 4,5-dioxygenase  30.85 
 
 		 437 aa  43.1  0.004  Burkholderia phymatum STM815  Bacteria  decreased coverage  0.00210676  normal  1 
 
 
-
 
NC_012560  Avin_31250  protocatechuate 4,5-dioxygenase  25.53 
 
 		 420 aa  41.6  0.01  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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