| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3200 |
|---|
| Symbol | |
|---|
| ID | 5190879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3615398 |
|---|
| End bp | 3616660 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587644 |
|---|
| Product | protocatechuate 4,5-dioxygenase |
|---|
| Protein accession | YP_001268510 |
|---|
| Protein GI | 148548408 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0373614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0556534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTA TCATTGGTGG CCTGGCCGTC TCCCACACCC CAACCATCGG CTTCGCAGTC
GACCACGACA AACAGGAAGA AGCCGCCTGG GCGCCGATCT TCGAAAGCTT CGAGCCGATC
CGCACGTGGC TGCAGCAGCG CCAGCCGGAC GTACTCTTCT ATATCTTCAA CGACCACATC
ACCTCGTTCT TCTTTGACCA TTACAGCGCC TTCACCCTGG GCGTAGACGA GCAGTATGGC
GTGGCCGATG AAGGGGGCAA TCCGCGGGAC CTGCCGCCAG TGGGCGGCCA CGCAGCGCTG
TCGCGGCACA TCGGCCAGAG CCTGATGGCC GATGAGTTCG ACATGAGCTT TTTCCGCGAC
AAGCCGCTGG ACCACGGCTT CTTCTCGCCC ATGTCGGCGC TGCTGCCCTG CGATGAAAGC
TGGCCCGTAC AGATCGTGCC GCTGCAGGTC GGCGTACTGC AGCTGCCGAT CCCCACGGCC
CGGCGCTGCT ACAAACTGGG CCAGGCATTG CGCCGCGCCA TCGAGAGCTA CCCCGAAGAC
CTCAAGGTGG CGATCGTCGC CACCGGCGGG GTGTCACACC AGGTGCACGG CGAGCGTTGC
GGCTTCAACA ACCCGGAGTG GGACGCGCAG TTCCTTGACC TGCTGGTGAA CGACCCGCAG
CGCCTTACCG AGATGACACT GGCCGAGTAC GCCACGCTCG GCGGCATGGA AGGCGCCGAG
GTGATCACCT GGCTGATCAT GCGTGGCGCG TTGTCTGCCA ACGTTGAGCG CAAGCACCAA
AGCTACTACC TGCCGTCGAT GACCGGCATT GCCACCCTGC TGCTGGAAAA CCGCGACCAG
GCACTGCCGG CACCGGTCAA CGAACGCCAC CGCCAGCACA TGCAGCATCA GCTGGCAGGG
GCTGAGCAGC TTGAGGGCAC CTATCCCTAC ACCTTGGAGC GCAGTGCCAA AGGCTACCGC
CTGAACAAGT TCTTGCATCG CATGATCGAG CCGCAGTGGC GCCAGCGCTT CCTGAGCGAA
CCCGAAGCGC TGTACCGCGA GGCAGGCCTG AGCGAAGAGG AAAGCGACCT GCTGCGCCGC
CGCGACTGGC GTGGGCTGAT CCACTACGGG GTGATCTTCT TCGTACTGGA GAAGCTGGGC
GCCGTACTGG GTGTGTCCAA CCTGGACATT TACGCCGCCA TGCGCGGGCA GAGCATCGAA
GACTTCATGA AGACCCGTAA CCAGCAGGTT CGATACTCGG TGGCCGGCAA AGCACCCAAC
TGA
|
|---|
| Protein sequence | MARIIGGLAV SHTPTIGFAV DHDKQEEAAW APIFESFEPI RTWLQQRQPD VLFYIFNDHI
TSFFFDHYSA FTLGVDEQYG VADEGGNPRD LPPVGGHAAL SRHIGQSLMA DEFDMSFFRD
KPLDHGFFSP MSALLPCDES WPVQIVPLQV GVLQLPIPTA RRCYKLGQAL RRAIESYPED
LKVAIVATGG VSHQVHGERC GFNNPEWDAQ FLDLLVNDPQ RLTEMTLAEY ATLGGMEGAE
VITWLIMRGA LSANVERKHQ SYYLPSMTGI ATLLLENRDQ ALPAPVNERH RQHMQHQLAG
AEQLEGTYPY TLERSAKGYR LNKFLHRMIE PQWRQRFLSE PEALYREAGL SEEESDLLRR
RDWRGLIHYG VIFFVLEKLG AVLGVSNLDI YAAMRGQSIE DFMKTRNQQV RYSVAGKAPN
|
|---|
| |