| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_38370 |
|---|
| Symbol | |
|---|
| ID | 8389158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 4155944 |
|---|
| End bp | 4156294 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644977848 |
|---|
| Product | protocatechuate 4,5-dioxygenase alpha subunit |
|---|
| Protein accession | YP_003135608 |
|---|
| Protein GI | 257057776 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02792] protocatechuate 4,5-dioxygenase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGGG TGAATGTCCC GGGTACGCAC GTGTTCGACG CCGAGTCGAG TCGGCGTAGC
TACAAGCTCA ACAAGATGTT CATGTCGTTG CGGGACCCCG CCGCGCGGGA GCGGTTCAGC
GCCGACGAGG CGGGTTACTG CGACGAGTTC GGACTGACCC CCGAACAGAA GCAAGCCGTG
CTGGACAGGG ACTGGAAGAA GATGCTCGAT CTGGGCAGCA GCATCTTCTA CGTCCTGAAG
CTGGCGATGA TCGACAAGAA GTCGATGCAG TATCTCGGTG GCGTGTTCAC CGGGATGACC
GAAGAGGAAT TCGTCGCGAT GATGCGAGCG GGAGGGCGGA CCAATGGCTG A
|
|---|
| Protein sequence | MSRVNVPGTH VFDAESSRRS YKLNKMFMSL RDPAARERFS ADEAGYCDEF GLTPEQKQAV
LDRDWKKMLD LGSSIFYVLK LAMIDKKSMQ YLGGVFTGMT EEEFVAMMRA GGRTNG
|
|---|
| |