32 homologs were found in PanDaTox collection
for query gene RPB_1060 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_1060  protocatechuate 4,5-dioxygenase subunit alpha  100 
 
 		 127 aa  257  4e-68  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1198  protocatechuate 4,5-dioxygenase subunit alpha  85.94 
 
 		 124 aa  189  2e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2733  protocatechuate 4,5-dioxygenase subunit alpha  61.6 
 
 		 117 aa  148  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.453288 
 
 
-
 
NC_010524  Lcho_3698  protocatechuate 4,5-dioxygenase subunit alpha  69.44 
 
 		 120 aa  147  4e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007908  Rfer_0295  protocatechuate 4,5-dioxygenase subunit alpha  67.92 
 
 		 117 aa  140  5e-33  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2734  protocatechuate 4,5-dioxygenase subunit alpha  64.15 
 
 		 121 aa  132  1.9999999999999998e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0103639  normal  0.0458484 
 
 
-
 
NC_009654  Mmwyl1_3939  protocatechuate 4,5-dioxygenase subunit alpha  56.76 
 
 		 120 aa  130  7.999999999999999e-30  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_1233  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  56.64 
 
 		 242 aa  126  8.000000000000001e-29  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0679707  n/a   
 
 
-
 
NC_009654  Mmwyl1_3921  protocatechuate 4,5-dioxygenase subunit alpha  53.85 
 
 		 115 aa  122  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.925791  normal  1 
 
 
-
 
NC_010002  Daci_0915  protocatechuate 4,5-dioxygenase subunit alpha  52.14 
 
 		 113 aa  116  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.0109457  normal  1 
 
 
-
 
NC_013159  Svir_38370  protocatechuate 4,5-dioxygenase alpha subunit  43.4 
 
 		 116 aa  92  2e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008786  Veis_0170  protocatechuate 4,5-dioxygenase  43.4 
 
 		 443 aa  89.4  2e-17  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.827608  normal  1 
 
 
-
 
NC_010002  Daci_3814  protocatechuate 4,5-dioxygenase subunit alpha  37.38 
 
 		 135 aa  87  7e-17  Delftia acidovorans SPH-1  Bacteria  normal  0.345259  normal  0.226916 
 
 
-
 
NC_008781  Pnap_2028  protocatechuate 4,5-dioxygenase subunit alpha  39.05 
 
 		 150 aa  84.7  4e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.261713  normal  1 
 
 
-
 
NC_010524  Lcho_3636  protocatechuate 4,5-dioxygenase subunit alpha  38.32 
 
 		 146 aa  84  6e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_4446  protocatechuate 4,5-dioxygenase subunit alpha  38.32 
 
 		 152 aa  83.2  0.000000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.256518  normal  0.163642 
 
 
-
 
NC_011004  Rpal_5182  protocatechuate 4,5-dioxygenase subunit alpha  37.04 
 
 		 129 aa  83.2  0.000000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_0873  protocatechuate 4,5-dioxygenase subunit alpha  38.1 
 
 		 129 aa  82.8  0.000000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.58932 
 
 
-
 
NC_007963  Csal_0325  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  43.43 
 
 		 118 aa  82.4  0.000000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0235577  n/a   
 
 
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NC_010623  Bphy_3205  protocatechuate 4,5-dioxygenase, alpha subunit  39.81 
 
 		 135 aa  81.3  0.000000000000004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_0331  protocatechuate 4,5-dioxygenase subunit alpha  37.96 
 
 		 147 aa  81.3  0.000000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_0983  protocatechuate 4,5-dioxygenase subunit alpha  37.38 
 
 		 129 aa  80.5  0.000000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0570785  normal  1 
 
 
-
 
NC_009485  BBta_2701  protocatechuate 4,5-dioxygenase subunit alpha  37.14 
 
 		 129 aa  79.7  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.542053 
 
 
-
 
NC_008538  Arth_4373  protocatechuate 4,5-dioxygenase  35.19 
 
 		 433 aa  78.2  0.00000000000004  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3886  protocatechuate 4,5-dioxygenase subunit alpha  39.42 
 
 		 128 aa  77.8  0.00000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0508  protocatechuate 4,5-dioxygenase subunit alpha  34 
 
 		 135 aa  69.3  0.00000000002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_2813  protocatechuate 4,5-dioxygenase subunit alpha  34.29 
 
 		 145 aa  67  0.00000000008  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.405358  n/a   
 
 
-
 
NC_009512  Pput_3200  protocatechuate 4,5-dioxygenase  29.9 
 
 		 420 aa  47.8  0.00005  Pseudomonas putida F1  Bacteria  normal  0.0373614  normal  0.0556534 
 
 
-
 
NC_010501  PputW619_2030  protocatechuate 4,5-dioxygenase  29.9 
 
 		 420 aa  47.8  0.00005  Pseudomonas putida W619  Bacteria  normal  0.638746  normal  1 
 
 
-
 
NC_002947  PP_2518  protocatechuate 4,5-dioxygenase  29.9 
 
 		 420 aa  47.8  0.00005  Pseudomonas putida KT2440  Bacteria  normal  0.618608  normal  1 
 
 
-
 
NC_010087  Bmul_6041  protocatechuate 4,5-dioxygenase  31.63 
 
 		 434 aa  43.9  0.0008  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.0923014 
 
 
-
 
NC_012560  Avin_31250  protocatechuate 4,5-dioxygenase  25.51 
 
 		 420 aa  40.4  0.008  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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