32 homologs were found in PanDaTox collection
for query gene Pnap_2734 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008781  Pnap_2734  protocatechuate 4,5-dioxygenase subunit alpha  100 
 
 		 121 aa  247  4e-65  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0103639  normal  0.0458484 
 
 
-
 
NC_007908  Rfer_0295  protocatechuate 4,5-dioxygenase subunit alpha  81.08 
 
 		 117 aa  189  1e-47  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_3698  protocatechuate 4,5-dioxygenase subunit alpha  76.47 
 
 		 120 aa  174  2e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_0915  protocatechuate 4,5-dioxygenase subunit alpha  77.06 
 
 		 113 aa  174  4e-43  Delftia acidovorans SPH-1  Bacteria  normal  0.0109457  normal  1 
 
 
-
 
NC_009485  BBta_2733  protocatechuate 4,5-dioxygenase subunit alpha  79.25 
 
 		 117 aa  174  4e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.453288 
 
 
-
 
NC_009654  Mmwyl1_3921  protocatechuate 4,5-dioxygenase subunit alpha  53.51 
 
 		 115 aa  133  7.000000000000001e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.925791  normal  1 
 
 
-
 
NC_007778  RPB_1060  protocatechuate 4,5-dioxygenase subunit alpha  64.15 
 
 		 127 aa  122  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3939  protocatechuate 4,5-dioxygenase subunit alpha  54.13 
 
 		 120 aa  121  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1198  protocatechuate 4,5-dioxygenase subunit alpha  62.62 
 
 		 124 aa  120  4e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_1233  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  58.16 
 
 		 242 aa  118  3e-26  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0679707  n/a   
 
 
-
 
NC_008781  Pnap_2028  protocatechuate 4,5-dioxygenase subunit alpha  43.75 
 
 		 150 aa  105  2e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.261713  normal  1 
 
 
-
 
NC_010524  Lcho_3636  protocatechuate 4,5-dioxygenase subunit alpha  45.37 
 
 		 146 aa  104  4e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008786  Veis_0170  protocatechuate 4,5-dioxygenase  43.52 
 
 		 443 aa  102  1e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.827608  normal  1 
 
 
-
 
NC_007963  Csal_0325  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  48.48 
 
 		 118 aa  98.6  3e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0235577  n/a   
 
 
-
 
NC_010002  Daci_4446  protocatechuate 4,5-dioxygenase subunit alpha  39.81 
 
 		 152 aa  97.8  4e-20  Delftia acidovorans SPH-1  Bacteria  normal  0.256518  normal  0.163642 
 
 
-
 
NC_007958  RPD_0983  protocatechuate 4,5-dioxygenase subunit alpha  38.46 
 
 		 129 aa  97.1  7e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0570785  normal  1 
 
 
-
 
NC_011004  Rpal_5182  protocatechuate 4,5-dioxygenase subunit alpha  37.61 
 
 		 129 aa  96.3  1e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010623  Bphy_3205  protocatechuate 4,5-dioxygenase, alpha subunit  41.82 
 
 		 135 aa  94.7  3e-19  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_3814  protocatechuate 4,5-dioxygenase subunit alpha  37.04 
 
 		 135 aa  94.7  4e-19  Delftia acidovorans SPH-1  Bacteria  normal  0.345259  normal  0.226916 
 
 
-
 
NC_007778  RPB_0873  protocatechuate 4,5-dioxygenase subunit alpha  39.81 
 
 		 129 aa  94.4  5e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.58932 
 
 
-
 
NC_007908  Rfer_0331  protocatechuate 4,5-dioxygenase subunit alpha  38.89 
 
 		 147 aa  94  6e-19  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3886  protocatechuate 4,5-dioxygenase subunit alpha  40.37 
 
 		 128 aa  93.6  9e-19  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2701  protocatechuate 4,5-dioxygenase subunit alpha  37.96 
 
 		 129 aa  92  2e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.542053 
 
 
-
 
NC_009654  Mmwyl1_0508  protocatechuate 4,5-dioxygenase subunit alpha  45.45 
 
 		 135 aa  92  2e-18  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008538  Arth_4373  protocatechuate 4,5-dioxygenase  38.89 
 
 		 433 aa  91.3  4e-18  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_38370  protocatechuate 4,5-dioxygenase alpha subunit  37.04 
 
 		 116 aa  77.4  0.00000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_2813  protocatechuate 4,5-dioxygenase subunit alpha  31.58 
 
 		 145 aa  73.9  0.0000000000007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.405358  n/a   
 
 
-
 
NC_002947  PP_2518  protocatechuate 4,5-dioxygenase  28.3 
 
 		 420 aa  48.9  0.00002  Pseudomonas putida KT2440  Bacteria  normal  0.618608  normal  1 
 
 
-
 
NC_010501  PputW619_2030  protocatechuate 4,5-dioxygenase  28.3 
 
 		 420 aa  48.5  0.00003  Pseudomonas putida W619  Bacteria  normal  0.638746  normal  1 
 
 
-
 
NC_009512  Pput_3200  protocatechuate 4,5-dioxygenase  28.3 
 
 		 420 aa  48.5  0.00003  Pseudomonas putida F1  Bacteria  normal  0.0373614  normal  0.0556534 
 
 
-
 
NC_012560  Avin_31250  protocatechuate 4,5-dioxygenase  26.17 
 
 		 420 aa  46.6  0.0001  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6377  protocatechuate 4,5-dioxygenase  30.97 
 
 		 437 aa  45.4  0.0003  Burkholderia phymatum STM815  Bacteria  decreased coverage  0.00210676  normal  1 
 
 
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