35 homologs were found in PanDaTox collection
for query gene Rfer_0295 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_0295  protocatechuate 4,5-dioxygenase subunit alpha  100 
 
 		 117 aa  239  9e-63  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2734  protocatechuate 4,5-dioxygenase subunit alpha  81.08 
 
 		 121 aa  189  1e-47  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0103639  normal  0.0458484 
 
 
-
 
NC_010002  Daci_0915  protocatechuate 4,5-dioxygenase subunit alpha  73.33 
 
 		 113 aa  161  3e-39  Delftia acidovorans SPH-1  Bacteria  normal  0.0109457  normal  1 
 
 
-
 
NC_009485  BBta_2733  protocatechuate 4,5-dioxygenase subunit alpha  66.96 
 
 		 117 aa  161  3e-39  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.453288 
 
 
-
 
NC_010524  Lcho_3698  protocatechuate 4,5-dioxygenase subunit alpha  70.69 
 
 		 120 aa  159  1e-38  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007778  RPB_1060  protocatechuate 4,5-dioxygenase subunit alpha  67.92 
 
 		 127 aa  128  3e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3921  protocatechuate 4,5-dioxygenase subunit alpha  52.21 
 
 		 115 aa  127  7.000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.925791  normal  1 
 
 
-
 
NC_007794  Saro_1233  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  62.24 
 
 		 242 aa  126  1.0000000000000001e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0679707  n/a   
 
 
-
 
NC_011004  Rpal_1198  protocatechuate 4,5-dioxygenase subunit alpha  67.29 
 
 		 124 aa  126  1.0000000000000001e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3939  protocatechuate 4,5-dioxygenase subunit alpha  52.99 
 
 		 120 aa  123  7e-28  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_0983  protocatechuate 4,5-dioxygenase subunit alpha  39.29 
 
 		 129 aa  98.2  3e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0570785  normal  1 
 
 
-
 
NC_010524  Lcho_3636  protocatechuate 4,5-dioxygenase subunit alpha  37.61 
 
 		 146 aa  98.2  3e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_008786  Veis_0170  protocatechuate 4,5-dioxygenase  39.29 
 
 		 443 aa  97.8  4e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.827608  normal  1 
 
 
-
 
NC_011004  Rpal_5182  protocatechuate 4,5-dioxygenase subunit alpha  38.39 
 
 		 129 aa  97.1  7e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2028  protocatechuate 4,5-dioxygenase subunit alpha  39.81 
 
 		 150 aa  97.1  8e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.261713  normal  1 
 
 
-
 
NC_007963  Csal_0325  extradiol ring-cleavage dioxygenase LigAB, LigA subunit  46.46 
 
 		 118 aa  96.3  1e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0235577  n/a   
 
 
-
 
NC_007778  RPB_0873  protocatechuate 4,5-dioxygenase subunit alpha  37.5 
 
 		 129 aa  96.7  1e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.58932 
 
 
-
 
NC_010002  Daci_4446  protocatechuate 4,5-dioxygenase subunit alpha  38.39 
 
 		 152 aa  95.1  3e-19  Delftia acidovorans SPH-1  Bacteria  normal  0.256518  normal  0.163642 
 
 
-
 
NC_010623  Bphy_3205  protocatechuate 4,5-dioxygenase, alpha subunit  41.82 
 
 		 135 aa  94  7e-19  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_3886  protocatechuate 4,5-dioxygenase subunit alpha  38.39 
 
 		 128 aa  93.2  1e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_0331  protocatechuate 4,5-dioxygenase subunit alpha  36.75 
 
 		 147 aa  92.4  2e-18  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2701  protocatechuate 4,5-dioxygenase subunit alpha  35.71 
 
 		 129 aa  91.7  3e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.542053 
 
 
-
 
NC_010002  Daci_3814  protocatechuate 4,5-dioxygenase subunit alpha  33.93 
 
 		 135 aa  90.9  6e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.345259  normal  0.226916 
 
 
-
 
NC_009654  Mmwyl1_0508  protocatechuate 4,5-dioxygenase subunit alpha  35.71 
 
 		 135 aa  85.1  3e-16  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_38370  protocatechuate 4,5-dioxygenase alpha subunit  38.89 
 
 		 116 aa  81.3  0.000000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008538  Arth_4373  protocatechuate 4,5-dioxygenase  32.48 
 
 		 433 aa  80.9  0.000000000000005  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_2813  protocatechuate 4,5-dioxygenase subunit alpha  33.33 
 
 		 145 aa  72.4  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.405358  n/a   
 
 
-
 
NC_010501  PputW619_2030  protocatechuate 4,5-dioxygenase  30 
 
 		 420 aa  51.6  0.000003  Pseudomonas putida W619  Bacteria  normal  0.638746  normal  1 
 
 
-
 
NC_009512  Pput_3200  protocatechuate 4,5-dioxygenase  30 
 
 		 420 aa  51.6  0.000003  Pseudomonas putida F1  Bacteria  normal  0.0373614  normal  0.0556534 
 
 
-
 
NC_002947  PP_2518  protocatechuate 4,5-dioxygenase  30 
 
 		 420 aa  51.6  0.000003  Pseudomonas putida KT2440  Bacteria  normal  0.618608  normal  1 
 
 
-
 
NC_012560  Avin_31250  protocatechuate 4,5-dioxygenase  27.72 
 
 		 420 aa  48.5  0.00003  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010087  Bmul_6041  protocatechuate 4,5-dioxygenase  28.7 
 
 		 434 aa  43.9  0.0008  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.0923014 
 
 
-
 
NC_010625  Bphy_6377  protocatechuate 4,5-dioxygenase  29.57 
 
 		 437 aa  42.4  0.002  Burkholderia phymatum STM815  Bacteria  decreased coverage  0.00210676  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7572  protocatechuate 4,5-dioxygenase  29.63 
 
 		 434 aa  42.4  0.002  Burkholderia sp. 383  Bacteria  normal  0.872573  normal  1 
 
 
-
 
NC_009485  BBta_2174  protocatechuate 4,5-dioxygenase  24.24 
 
 		 426 aa  41.2  0.005  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
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